Pairwise Alignments

Query, 457 a.a., Two-component system sensor histidine kinase from Variovorax sp. SCN45

Subject, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  139 bits (349), Expect = 3e-37
 Identities = 96/342 (28%), Positives = 172/342 (50%), Gaps = 22/342 (6%)

Query: 4   RTKIVALAVAPLLIALVLVALAVRHQEH-DLAQRERALIERSYMAQRRGELRSYVDLAVS 62
           RTK++ L V PL++   LV +AV +Q      Q+E        +  ++ EL++Y+ + V+
Sbjct: 13  RTKLLLLTVIPLIVITALV-MAVNYQSGLSTLQKELENYRTDLIDAKKKELQAYLMMGVT 71

Query: 63  NLLPLYESGKDDEATRNEALRRLAALNYGDDGYFFVYDLEGNSLMHSRQPELVGQNLWGM 122
            + PLYES K  E  + +A + L A+ +  DGYFF YD +G + +H+ +PEL G+NL+GM
Sbjct: 72  AVKPLYESDKAGE-NQAQAKQILKAMRFDSDGYFFAYDSQGVNTLHAIKPELEGKNLYGM 130

Query: 123 RDSHGRYTIQELIKGAKEKGGAYVEYEWRKPSSAQLAPKLGYVTAMPRWNWMVGTGLYLD 182
           +D +G   I  LI  +K  G  ++ + W KP+    APKLGY   +P+W+W++GTG+Y+D
Sbjct: 131 KDENGVAVIAGLIDASKT-GDGFLYFSWHKPTINAQAPKLGYAEYLPKWDWVLGTGIYID 189

Query: 183 DIQSTMDTLDRQMNANVTATLLWIAGIAALCL-GVVSAAGLLLN---------LSEHRTA 232
           D+ + +     Q  A++   ++   G++ + L   + A  +L++         +S  +  
Sbjct: 190 DVDTQVAEFRAQREADLYDQMISAIGLSVVGLVFTIIAVSVLVSRGIAPLQHVVSSLQAV 249

Query: 233 EAKLRLLARRVVQSQEEERGHLAR-------ELHDGTSQTLVSAKLLIESAVESLESRHQ 285
            A    L  R+    ++E G +A+       +LH   +    SA   +E+A + L+ +  
Sbjct: 250 AAGGGDLTARIKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASAN-TVEAAAQELDQQTS 308

Query: 286 PTPPALPKALQRLNDSLIEVRRISHRLRPALLDTLGLPAALE 327
                +       +  +  V  +S   R    +T     A+E
Sbjct: 309 QASHKMDGHCLETDKVVAAVTEMSATAREVASNTYSTAQAIE 350