Pairwise Alignments

Query, 1056 a.a., Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB-like from Variovorax sp. SCN45

Subject, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  474 bits (1219), Expect = e-137
 Identities = 304/1031 (29%), Positives = 532/1031 (51%), Gaps = 40/1031 (3%)

Query: 3    ISATFIKRPIGTTLLALAILLVGAAVFPLLPVAPLPQVDFPTIQVSASLPGASPETMASN 62
            +S   +KRP+   +L++ + + G   F  L V  +P ++ P + VS    GAS   + S 
Sbjct: 3    LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62

Query: 63   VAQPLERNFSLIAGLSQMTSTSGLGNTQITLQFDLDRSIDAAALDVQAAINASTGQLPAN 122
            +   LE   + I+G+ ++TS S  G ++IT+ F+L   ++    D++ A+  +   LP  
Sbjct: 63   ITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPEE 122

Query: 123  LPSPPTFRKVNPADAPILILSVQSKTLPLTEVNDYADNILAQQISQISGVGLVNIGGVQK 182
               P  F+      A + I ++ S  +  T++ DY + +L  + S ISGV  V++ G   
Sbjct: 123  ADDPQVFKNNGSGQASVYI-NLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGLY 181

Query: 183  PAVRVQVDPAKLAALGLSLEDVRTVLASATVNAPKGTIDGPNQSFTVYTNDQLLKAQPWN 242
              + V++ P  +A  G++  D+   L    + +P G +   +   +V T      A+ + 
Sbjct: 182  KVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDFE 241

Query: 243  DVVLAYRN-GAPIRVRDLGVAVDGPENSKIAGWAYAGAAAPAGSNVQNGRSIVLAITKQP 301
             +V+   + G PI ++D+     G EN           +      + N   + + I  Q 
Sbjct: 242  YLVVKRASDGTPIYLKDVADVFIGAENEN---------STFKSDGIVN---VSMGIVPQS 289

Query: 302  GANVIETVDRINAALPRLKASIPPTVDVNAIIDRTQTIRASVKDVEFTLLLTIALVVAVI 361
             AN +E   R++  + +++  +P    +    D T  I  S+ +V  TL +T  LV+ V+
Sbjct: 290  DANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVL 349

Query: 362  FVFLRNVPATLIPSVTVPLALLGTVGVMYLLGYSLDNLSLMALTIAVGFVVDDAIVMLEN 421
            ++F+  + ATLIP+VTVP++L+      Y  G+S++ ++LMAL +++G VVDDAIV++EN
Sbjct: 350  YIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVEN 409

Query: 422  IYRYVEEGMTAMEAAYKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVTL 481
            I+ ++E G   + AAYKG  E+GF +I+ ++ LV VF+P+  M G+VG LF EF+V + +
Sbjct: 410  IFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAM 469

Query: 482  TIVVSVIISLTLTPMLCSRFLKNEHGNKHGRLYQLFERGFDAMLNGYKRGLHVVLDHQFI 541
             ++ S +I+LTLTP+L S+ LK     K GR  QL +R F  + +GY++ +   +  ++ 
Sbjct: 470  AVIFSSLIALTLTPVLGSKLLK--ANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWA 527

Query: 542  TLMVFIATVAATGVLFAVIPKGFFPQQDTGFISGFAESAQDASFASMNARMIQLADVVRK 601
              +V  A +  +  L  ++P    P +D G I  F   A   S+  M A M    D+V +
Sbjct: 528  APVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANM----DLVEQ 583

Query: 602  -------DPDVTGFGMNGSSSTYNTGN---FYISLKPKDEGRTATADEIITRLRPQLAKV 651
                      +  F +   +   N G+   F I +      RT TA E ++++R  LA +
Sbjct: 584  RLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGI 643

Query: 652  QGVNLFLQAGQDIRVGGR-ASRTQYQYTVTDADLDELNTWAPKLLARFKQLPELTDLATD 710
              V +F         G R  S    Q+ +  +D  EL TWA KL    ++ P +T    D
Sbjct: 644  PDVRVF-----PFMPGFRGGSNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADID 698

Query: 711  QQNAAASAVLTIDRDRASSFGISPATIDATLYDAIGQRQVAQYFTQLNSYHVVLEVTPGV 770
                    V+TID+ RA+  GIS  +I  TL   +G ++V  +  +   Y V L      
Sbjct: 699  YSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENS 758

Query: 771  QQDPALFSKLYLSSPITGQQVPLSTFVKVDTSKTAYLSISHQGQFPAVTISFNLAPGVAL 830
              + A  S++Y+ +  TG+ V L T  ++D   +A + ++H  +  +VTI+ NL  G  L
Sbjct: 759  FNNAADLSQIYMRT-ATGELVTLDTVTRIDEVASA-IRLAHYNKQKSVTITANLEAGYTL 816

Query: 831  GDAVNAINKAQAEMGLPQSLTGSFQGTAQAFQDSLATQPYLIAAALVAVYIVLGLLYESY 890
            G A++ +++   E+ LP  ++ S+ G ++ F+++ ++   + A AL+  Y+VL   +ES+
Sbjct: 817  GQALDFLDQKAQEI-LPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESF 875

Query: 891  IHPLTILSTLPSAGVGALLILMAGGYDLSVIALIGIILLIGIVKKNGIMMIDFALKAERE 950
            I+PL ++ T+P    G  L L   G  +++ + IG+I+LIG+V KNGI++++FA +  R+
Sbjct: 876  INPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQL-RD 934

Query: 951  QGMSPHDAIYQACLLRFRPIMMTTMCALLSGLPLMLGHGSGSELRRPLGYAMVGGLILSQ 1010
            +G+    AI  A   R RPI+MT    L   +PL++  G+G E R  +G  +  G+  + 
Sbjct: 935  RGVEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFAT 994

Query: 1011 ALTLFTTPVVY 1021
             +TL   P +Y
Sbjct: 995  LVTLLVIPAMY 1005