Pairwise Alignments

Query, 411 a.a., Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA from Variovorax sp. SCN45

Subject, 433 a.a., Probable RND efflux membrane fusion protein from Pseudomonas fluorescens FW300-N2E2

 Score =  240 bits (612), Expect = 7e-68
 Identities = 133/340 (39%), Positives = 200/340 (58%), Gaps = 1/340 (0%)

Query: 48  KPEAAQAPPPVQVTTVRVKQQEVQTYRSGIGTVASMATVTVKARIDGQLDKVGFVEGQDV 107
           +P    A  P+ V        +   Y   +GTV ++ T+ V++R+ G+L K+ F EGQ V
Sbjct: 56  RPGFGGATGPIPVRVAPAVTGDFPLYFKALGTVTALNTINVRSRVGGELVKIAFEEGQMV 115

Query: 108 KAGQMLAQLDPRTLQAQLAQAQATRAKDQATLVNARADLKRYTTLIAQDAATQQQLDTQK 167
           KAG +LA++DPR  Q  L QA+ T  ++QA L NA+ D +RY  L A+D+  +Q LDT  
Sbjct: 116 KAGDLLAEIDPRPYQNALLQAEGTLLQNQAQLKNAQVDFERYRGLYAEDSIAKQTLDTAA 175

Query: 168 ALVNQLEATVQNDAAQVQYAEVQLSFTRISSPMDGRVGARLVDPGNIVHAADTNGLVVIN 227
           ALV Q + TV+ + A V  A++ L FT+I +P+ GRVG R +D GN+V A DT  L VI 
Sbjct: 176 ALVGQYQGTVKTNQAAVNDAKLNLEFTKIRAPISGRVGLRQLDIGNLVAANDTTALAVIT 235

Query: 228 QIDPIAVQFTLPEDAVQDINRLQQKSSQPLSVVAYDRSGAQMLGTGKLILLNNQIDTTSG 287
           Q  PI+V FTLPE+ + D    + +S   L V A+DR   ++  +G L  L+NQID T+G
Sbjct: 236 QTQPISVVFTLPENNL-DTVLARYRSGAKLPVEAWDRGDVKLQASGVLQSLDNQIDVTTG 294

Query: 288 TVQLKGSFANPQHALWPGQYVNVRLQLERRPDSLTVPAAAVQRGQDNTYVWVVDDENKVS 347
           T++ K  + N   +L+P Q+VNVRL  +        P AA+Q G + T+V+ ++ + KV+
Sbjct: 295 TLKFKARYENRDQSLFPNQFVNVRLLADTLKGVTLAPTAAIQFGTNGTFVYALEGDKKVT 354

Query: 348 NVPVHVVQIADGTAVIDKGLSVNQRVVVDGQYKLKPGSTV 387
              + +        V+ +GL+   RVV++G  +LK GS V
Sbjct: 355 IKKLKIGASDGANTVVTEGLAAGDRVVLEGTDRLKEGSEV 394