Pairwise Alignments

Query, 1172 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

 Score =  949 bits (2453), Expect = 0.0
 Identities = 536/1170 (45%), Positives = 734/1170 (62%), Gaps = 49/1170 (4%)

Query: 2    FVHLRLHTEFSVVDGTNRIDEAIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKPV 61
            F+HLR+H++FS+VDG +++   +K  AA   PA+A+TD  NL G VKFY      GVKP+
Sbjct: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65

Query: 62   IGAEIFIDG--LGKEPGALTRIVLLVQSMEGYLNLSELLARAWTQNVARGQSQAACKLEW 119
            IGA+  +     G E   LT++ LL ++  GY NL+ L+++A+ +     Q Q      W
Sbjct: 66   IGADFTLQSEEFGDE---LTKLTLLAKNNVGYKNLTLLISKAYLRGHV--QHQPVIDKAW 120

Query: 120  VQELSGGLIALSGAQAGPLGQPLLQGQGERAAELALQLAGIFPHRFYIELQRAGRPEDEP 179
            + E + GLI LSG ++G +G+ LL+G  ++           F   FY+EL R GR ++E 
Sbjct: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180

Query: 180  HVIAAVQLAARLKLPVVATHPVQFAAREDYEAHEARVCISEGEILGNPRRVRRFTEEQYF 239
            ++  A+ +A +  LPVVAT+ V F   E +EAHE RV I +G  L +PRR + ++ +QY 
Sbjct: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240

Query: 240  KSTAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEGVRMPIDDFFRQ 299
            +S AEM  LFAD+P ALAN+VEIAKRCN+T+ LG+  LP+FPT        M I+DF   
Sbjct: 241  RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG------GMAIEDFLVM 294

Query: 300  ESFEGLEMRLRHLYPDEAKREAQRARYVERLEFEINTILNMGFPGYFLIVGDFIKWAKEN 359
            +S EGLE RL  L+PD   R  +R  Y ERL+ E++ I  MGFPGYFLIV +FI+W+K+N
Sbjct: 295  KSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDN 354

Query: 360  GCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRDRV 419
              PVGPGRGSGAGSLVAYALKITDLDPLEY LLFERFLNPERVSMPDFD+DFC   RD+V
Sbjct: 355  DIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQV 414

Query: 420  IDYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGMSVTLQ 479
            ID+V + YGR+AVSQI TFGTMAA+A IRDVGRVL   + F D ISKL+P  PGM++   
Sbjct: 415  IDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTL--- 471

Query: 480  YPPEKKIEGDKNNYAIEMEPQLAERIEKEEEVRMLVELAQKLEGMTRNIGMHAGGVLIAP 539
               EK         A   EP L E  + +EEV+ L++  + LEG TRN G HAGGV+I+P
Sbjct: 472  ---EK---------AFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISP 519

Query: 540  GKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHK-- 597
              +TDF P+Y        V+Q+DK+DVE  GLVKFDFLGL TLTI++ A   +  R K  
Sbjct: 520  TAITDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKA 579

Query: 598  GQENFAFENIPLNDAATYRLFSEGTTEAVFQFESRGMQGMLKDARPTRLEDLIALNALYR 657
            G+     E IPL+DA ++R   +  T AVFQ ESRGM+ ++K  +P   ED+IAL AL+R
Sbjct: 580  GKPPVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFR 639

Query: 658  PGPMD--LIPSFVARKHGREEVEYP-----HPAVAEMLSETYGIMVYQEQVMQTAQILGG 710
            PGP+   ++ +F+ RKHGRE + YP     H ++ E+L  TYGI++YQEQVMQ AQ+L G
Sbjct: 640  PGPLQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSG 699

Query: 711  YSLGGADLLRRAMGKKKLEEMAEHREKFRAGALATHGIVQDKADEIFDLMEKFAGYGFNK 770
            Y+LGGAD+LRRAMGKKK EEMA+ R  F+ GA   +G+  + A +IFDL+EKFAGYGFNK
Sbjct: 700  YTLGGADMLRRAMGKKKPEEMAKQRAVFQEGA-EKNGVDGELAMKIFDLVEKFAGYGFNK 758

Query: 771  SHAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDVN 830
            SH+AAY+L++Y T WLK HY AEF  A MT +MD+T+K+  L ++  KN G+T  PPD+N
Sbjct: 759  SHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDEC-KNMGLTVLPPDIN 817

Query: 831  RGNYRFEPVTDRVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKR 890
             G YRF    +  I YG+GA+KG G+  +EA++ AR +GG FK LFDFC RID +++NKR
Sbjct: 818  SGLYRFNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKR 877

Query: 891  TVEALIKAGAFDAIQQNRASLIASVDRAFEFAIA--TAANASQVDIFGDCEHGSATAEPD 948
             +E LI AGA D +  +RA+++ASVD A   A     A    Q D+FG         E  
Sbjct: 878  VIEKLILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQK 937

Query: 949  LVDATPWGVKERLTLEKTAVGFYLSGHLFDEVSHEVRRFCKREIGDLLDSRDQQ--VIAG 1006
                  W  K RL  E+  +G YL+GH  DE   E+ ++    + +   +R  Q   +AG
Sbjct: 938  YTQVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAG 997

Query: 1007 IVSDFRVINGQRG-RLAIFKLDDKSDAIDATADEALINANRNTLKDDELVIVSGRLQPAR 1065
            +V   RV+  +RG R+ +  LDD+S  ++       ++     L+ D++++VSG++    
Sbjct: 998  LVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDD 1057

Query: 1066 GGFEARFQVQQVWDLATARCRFGKFLRVAVNGKAPDIARLIKDFPPRTEQTEVGDLIQGL 1125
                 +   ++V DL +AR +F + L +++     D  +  + F    E    G     +
Sbjct: 1058 FNGGLKMSAREVMDLGSAREKFARGLSISILQSQID-QQFFERFSHILEPHRAGT----V 1112

Query: 1126 PVRLSMARGGAQVELQLGERAKFFPTDAAL 1155
            PV +   R  A+  L LG   +  P+D  L
Sbjct: 1113 PVNVYYQRPDARARLTLGTEWRVTPSDTLL 1142