Pairwise Alignments

Query, 1172 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 870 a.a., DNA polymerase III subunit alpha from Synechococcus elongatus PCC 7942

 Score =  525 bits (1352), Expect = e-153
 Identities = 309/780 (39%), Positives = 469/780 (60%), Gaps = 40/780 (5%)

Query: 2   FVHLRLHTEFSVVDGTNRIDEAIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKG-VKP 60
           FV L +H+++S++DG +++ + +  A     PA+A+TD   ++GA++  K  + +G ++P
Sbjct: 3   FVGLHMHSDYSLLDGASQLPDLVARAKELGMPAIALTDHGVMYGAIELLKVCKNQGNIRP 62

Query: 61  VIGAEIF-IDGLGKEPGALTRI---VLLVQSMEGYLNLSELLARAWTQNV-ARGQSQAAC 115
           +IG E++ I+    +P    R    ++L ++ +GY NL +L + +  Q    RG     C
Sbjct: 63  IIGNEMYVINSPIDDPNPRVRKYHQIVLAKNKKGYQNLVKLTSISHLQGFKGRGIFARPC 122

Query: 116 -KLEWVQELSGGLIALSGAQAGPLGQPLLQGQGERAAELALQLAGIFPHRFYIELQRAGR 174
              E +++   GLI  S    G + Q +LQ + + A  +A      F   FY+E+Q  G 
Sbjct: 123 IDKEHLEKYREGLIVTSACLGGEIPQAILQSRPDVARRVAAWYQERFGEDFYLEIQDHGS 182

Query: 175 PEDEPHVIAAVQLAARLKLPVVATHPVQFAAREDYEAHEARVCISEGEILGNPRRVRRFT 234
           PED    +  V++A  L + +VAT+   F +  D EAH+A +CI  G+++   +R+R ++
Sbjct: 183 PEDRIVNVEIVRIAQELGIELVATNDSHFISCFDVEAHDALLCIQTGKLVVEDKRLR-YS 241

Query: 235 EEQYFKSTAEMQALFAD------VPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEG 288
             +Y KS  EM  LF D      +  A+ANT+ IA +     +LG+P++P FP P   +G
Sbjct: 242 GTEYLKSAEEMHQLFRDHLPDDVIAKAIANTLVIASKIEDYNILGEPKIPTFPVP---DG 298

Query: 289 VRMPIDDFFRQESFEGLEMRLRHLYPDEAKREAQRARYVERLEFEINTILNMGFPGYFLI 348
                + +  + + +GL  RL        + E     Y +RLE+EI  +  MGF  YFL+
Sbjct: 299 YNE--ETYMAEVARQGLAERLNC-----DRYEDCEEAYRDRLEYEIKMMHEMGFASYFLV 351

Query: 349 VGDFIKWAKENGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFD 408
           V D+IK+A++N  PVGPGRGS AGSLVAY + IT++DP+ + LLFERFLNPER SMPD D
Sbjct: 352 VWDYIKFARDNNIPVGPGRGSAAGSLVAYCMGITNIDPVHHGLLFERFLNPERKSMPDID 411

Query: 409 IDFCQGNRDRVIDYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLI 468
            DFC   RD+VIDYV  KYG + V+QI TF  M ++A ++DV RVLD+ Y   D ++KLI
Sbjct: 412 TDFCIDQRDKVIDYVTKKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAKLI 471

Query: 469 PNKPGMSVTLQYPPEKKIEGDKNNYAIEMEPQLAERIEKEEEVRMLVELAQKLEGMTRNI 528
           P   G    L     K +  D+        P+  E+ EK+  V+  V++A ++EG  +  
Sbjct: 472 PVARGKPAKL-----KVMISDQT-----PAPEFKEKYEKDARVKHWVDMALRIEGTNKTF 521

Query: 529 GMHAGGVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIA 588
           G+HA GV+I+   L +  PL Q+      ++QY  +D+EA GL+K DFLGL  LT+++ A
Sbjct: 522 GVHAAGVVISAVPLDEIVPL-QRNNDGQVITQYYMEDIEACGLLKMDFLGLRNLTMIQKA 580

Query: 589 REFIMKRHKGQENFAFENIPLNDAATYRLFSEGTTEAVFQFESRGMQGMLKDARPTRLED 648
            + + +   GQ     + +P++D  TY+L ++G  E VFQ ES GM+ +++D +P+ LED
Sbjct: 581 IDLVQET-SGQA-IDPDRLPMDDPKTYQLLAKGDLEGVFQLESSGMRQIVRDLKPSNLED 638

Query: 649 LIALNALYRPGPMD--LIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQ 706
           + ++ ALYRPGP+D  LIP F+ RKHGRE ++Y    +  +L+ETYGIMVYQEQ+M+ AQ
Sbjct: 639 ISSILALYRPGPLDAGLIPKFINRKHGREAIDYADQMLQPILNETYGIMVYQEQIMKIAQ 698

Query: 707 ILGGYSLGGADLLRRAMGKKKLEEMAEHREKFRAGALATHGIVQDKADEIFDLMEKFAGY 766
            +GGY+LG ADLLRRAMGKKK+ EM +H+  F  GA   +G+ +  A E+FD M  FA Y
Sbjct: 699 DMGGYTLGEADLLRRAMGKKKMSEMVKHQSTFVEGA-KKNGVAEKVAAELFDQMVLFAEY 757