Pairwise Alignments

Query, 1172 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 1087 a.a., DnaE3 DNA polymerase III alpha chain from Sinorhizobium meliloti 1021

 Score =  323 bits (827), Expect = 6e-92
 Identities = 281/1096 (25%), Positives = 486/1096 (44%), Gaps = 91/1096 (8%)

Query: 2    FVHLRLHTEFSVVDGTNRIDEAIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKPV 61
            +  L++ T FS +   +  +E    A      AL + D N+L G V+  +  R  G++ V
Sbjct: 3    YAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRLV 62

Query: 62   IGAEIFI-DGLGKEPGALTRIVLLVQSMEGYLNLSELLARAWTQNVARGQSQAACKLEW- 119
            +G  + + DG+         I++       Y  L+ LL    T    RG  +A C + + 
Sbjct: 63   VGCRLDLQDGMS--------ILVYPTDRAAYSRLTRLL----TLGKGRG-GKANCIIHFD 109

Query: 120  -VQELSGGLIALSGAQAGPLGQPLLQGQGERAAELALQ-LAGIFPHRFYIELQRAGRPED 177
             V   + GLI +           L+    +    + L+ +A +F  R Y+ L    RP D
Sbjct: 110  DVALYAEGLIGI-----------LVPDLADEVCAVQLRKIAEVFGDRAYVSLCLRRRPND 158

Query: 178  EPHVIAAVQLAARLKLPVVATHPVQFAAREDYEAHEARVCISEGEILGNPRRVRRFTEEQ 237
            +  +     LA + ++  + T+ V F      +  +   CI  G  + +    R    ++
Sbjct: 159  QLQLHELTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMTIDDVGFERERHADR 218

Query: 238  YFKSTAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEGVRMPIDDFF 297
            Y K   EM  LF   P ALA T+EI +RC  +L   +  +  +P   +  G  M      
Sbjct: 219  YLKPPEEMARLFPAYPEALARTMEIVERCRFSL---EELVYQYPEEALILG--MTAQQSL 273

Query: 298  RQESFEGLEMRLRHLYPDEAKREAQRARYVERLEFEINTILNMGFPGYFLIVGDFIKWAK 357
            +  ++EG+  R    YP+      ++      +  E+  I  M +  YFL V   +++A+
Sbjct: 274  QHYTWEGVRAR----YPEGLPTHVEKT-----IRHELALIETMKYAPYFLTVFSIVRYAR 324

Query: 358  ENGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRD 417
              G  +  GRGS A S V Y L IT +DP    LLFERF++ ER   PD D+DF    R+
Sbjct: 325  SQGI-LCQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHERRE 383

Query: 418  RVIDYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGMSVT 477
             VI ++   YG +  +  +T     A+ AIRDVG+ LD+     D I  L       S T
Sbjct: 384  EVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALDLPE---DLIRTLSSGIWSWSET 440

Query: 478  LQYPPEKKIEGDKNNYAIEMEPQLAERIEKEEEVRMLVELAQKLEGMTRNIGMHAGGVLI 537
            +         G++    + + P        +  + + + LAQ+L G  RN+  H GG ++
Sbjct: 441  V---------GERQVRELGLNPD-------DRRLTLTLRLAQQLMGAPRNLSQHPGGFVL 484

Query: 538  APGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHK 597
               +L D  P+     ++  V ++DKDD+EA+  +K D L L  LT +  A+ F +    
Sbjct: 485  THDRLDDLVPIEPATMADRQVIEWDKDDIEALKFLKVDVLALGMLTCM--AKAFALISEH 542

Query: 598  GQENFAFENIPLNDAATYRLFSEGTTEAVFQFESRGMQGMLKDARPTRLEDLIALNALYR 657
              E+     IP  D ATY +  +  T   FQ ESR    ML   +P    DL+   A+ R
Sbjct: 543  KHEDIDLATIPQEDPATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVR 602

Query: 658  PGPM--DLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLGG 715
            PGP+  D++  ++ R+ G+E+VEYP P +  +L +T G+ ++QE  M+ A +  G++ G 
Sbjct: 603  PGPIQGDMVHPYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFTGGE 662

Query: 716  ADLLRRAMGKKKLEEMAEHREKFRAGALATHGIVQDKADEIFDLMEKFAGYGFNKSHAAA 775
            AD LR++M   K        +      +  +G  ++ A++ F  +E F  YGF +SHAA+
Sbjct: 663  ADQLRKSMATFKFTGGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHAAS 722

Query: 776  YSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDVNRGNY- 834
            ++L+AY + ++K ++   F  A +  +         +  DA+++ G+   P  +NR  + 
Sbjct: 723  FALIAYASNYIKCYFPDVFCAALLNSQPMGFYAPAQIVRDAREH-GVEVRPICINRSRWD 781

Query: 835  -RFEPVT---DRVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKR 890
               EP+       +R G+  V+G        +V AR +  PF S+ D      R  +   
Sbjct: 782  CMLEPIDGSGGHAVRLGMRLVRGLATADAARIVAARAD-EPFTSVDDMW---RRSGVPVA 837

Query: 891  TVEALIKAGAF---DAIQQNRASLIASVDRAFEFAIATAANASQVDIFGDCEHGSATAEP 947
            ++  L +A AF    ++++  A       R     + TAA   +     + E      EP
Sbjct: 838  SLVELAEADAFLPSLSLERRDALWAIKALRDEPLPLFTAAADREARAIAEQE------EP 891

Query: 948  DLVDATPWGVKERLTLEKTAVGFYLSGHLFDEVSHEVRRFCKREIGDLLDSRDQQ--VIA 1005
            + V+       + +  + +  G  L  H    +  ++ +         + + D Q  + A
Sbjct: 892  E-VELRQMTDGQNVVEDYSHTGLTLREHPLRFMRDDLAKRRIVTCAQAMTAHDGQWLMAA 950

Query: 1006 GIVSDFRVINGQRGRLAIFKLDDKSDAIDATADEALINANRNTLKDDELVIVSGRLQPAR 1065
            G+V   R   G    +    ++D++   +      L   +R  +    ++ ++GR+Q  R
Sbjct: 951  GLVL-VRQRPGSAKGVMFITIEDETGIANIVVWPKLFERSRRVVLGASMMAINGRIQ--R 1007

Query: 1066 GGFEARFQVQQVWDLA 1081
             G       QQ++DL+
Sbjct: 1008 EGEVVHLVAQQLFDLS 1023