Pairwise Alignments

Query, 471 a.a., FIG00931285: hypothetical protein from Variovorax sp. SCN45

Subject, 1239 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  122 bits (305), Expect = 9e-32
 Identities = 86/253 (33%), Positives = 139/253 (54%), Gaps = 21/253 (8%)

Query: 220 HNHILIKSLTQQRQAAVSAVAMKNRFLASAAHDMRQPVLALSLYADWLR-----NEPELV 274
           H     + L +Q      A   K+ FLA+ +H++R P+ ++ + +D LR     N  E  
Sbjct: 582 HRKAAERRLREQADQLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQNGAGNLNEKQ 641

Query: 275 LELAPKIVRATHAVNALFDSMFDLARIDSGQVRLHVERVDVPELLHDLELQYRPVAESRG 334
           +  A  I RA H +  L + + DLA+I+SG ++L +E +++ E+L + +    P+AE +G
Sbjct: 642 VRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKLEPLNLREMLTEQQTSLGPMAEQKG 701

Query: 335 LDFRVHVCEGSFLT---DPIRVRRMIGNLLANAIKYTTEGGV--LLAARQTRDG----LR 385
           L  ++ V     +T   D  R+++++ NLL NA+K+T +G V  L + R   DG    L+
Sbjct: 702 LLLKIEVDADVPVTLNSDRARLQQILRNLLTNALKFTEQGEVELLASCRSAEDGSGQTLQ 761

Query: 386 VEVWDTGIGIAPEHLRDVFLEFYK----VADHAGTSDGFGLGLAIVARLSHVLGHPVSVR 441
           ++V D+GIGIA +    +F  F +    ++ H G   G GLGLAI  +L  VLG  V+V 
Sbjct: 762 LQVRDSGIGIAKDQHERIFQAFQQIDGSISRHYG---GTGLGLAITRQLVEVLGGQVTVE 818

Query: 442 SRLGSGSVFRVAL 454
           S LG G+ F V L
Sbjct: 819 SELGQGATFTVVL 831