Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

Subject, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

 Score =  189 bits (480), Expect = 4e-53
 Identities = 105/241 (43%), Positives = 150/241 (62%), Gaps = 12/241 (4%)

Query: 2   YTAQGTIEKSHL-LAQHQPLVRRIALQMMAKLPASVELDDLIQAGMLGLLDASSRYQDNR 60
           Y   G +    L L ++  LV+RIA  ++ +LP SV ++DLIQAGM+GLL+A   Y  ++
Sbjct: 7   YDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSK 66

Query: 61  GAQFETFVSQRIRGAMLDELRANDWGSRGLRQSARGIEKAIHALGHRLGRAPSEGEIAKE 120
           GA FET+   RIRGAMLD++R  DW  R + +  R I +AI  L   L R P++ E+AK 
Sbjct: 67  GASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKF 126

Query: 121 LKMDLEAYQSMLQEIQGCQLLYVEDF-AKDDPDNPFLDIHSKDARRDRRGGDDPLEQLLE 179
           L M LE Y S+L +I   +++ +ED    DD  +PF          +    + P   + E
Sbjct: 127 LNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISPF----------EEGEDNSPFHGVAE 176

Query: 180 SGFRHQLVDAISALPERDQLLLNLYYEEELNLREIGAILEVSQSRVCQLHSQAISRLRAK 239
             FR  LV++I +LPER+ L+L+LYY+EELNL+EIG +L VS+SRV Q+ SQ++ RLR K
Sbjct: 177 ESFRKALVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTK 236

Query: 240 L 240
           L
Sbjct: 237 L 237