Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score = 50.4 bits (119), Expect = 4e-11
 Identities = 57/217 (26%), Positives = 90/217 (41%), Gaps = 39/217 (17%)

Query: 40  DLIQAGMLGLLDASSRYQDNRGAQFETFVSQRIRGAMLDELRANDWGSRGLRQSARGIEK 99
           DLI+ G LGL+ A  ++   RG +F T+ +  IR  +           R L    R I  
Sbjct: 119 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI----------ERALMNQTRTIRL 168

Query: 100 AIHA-------------LGHRLGRAPSEGEIAKELKMDLEAYQSMLQEIQGCQLLYVEDF 146
            IH              L  RL   P+  EIA EL   ++    ML+  +  ++  V+  
Sbjct: 169 PIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNE--RISSVDTP 226

Query: 147 AKDDPDNPFLDI--HSKDARRDRRGGDDPLEQLLESGFRHQLVDAISAL-PERDQLL--- 200
              D D   LDI   S +A        DP     +   R  L++ +  L P++ ++L   
Sbjct: 227 IGGDGDKALLDILPDSHNA--------DPEFSTQDDDIRESLLNWLDELNPKQKEVLARR 278

Query: 201 LNLYYEEELNLREIGAILEVSQSRVCQLHSQAISRLR 237
             L   E   L E+G  + +++ RV Q+  + + RLR
Sbjct: 279 FGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315