Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

Subject, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

 Score = 57.4 bits (137), Expect = 7e-13
 Identities = 49/215 (22%), Positives = 96/215 (44%), Gaps = 35/215 (16%)

Query: 40  DLIQAGMLGLLDASSRYQDNRGAQFETFVSQRIRGAMLDELRANDWGSRGLRQSARGIEK 99
           DLIQ G +GL+ A  +++  RG +F T+ +  IR A+          +R +   AR I  
Sbjct: 415 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI----------TRSIADQARTIRI 464

Query: 100 AIHALG-------------HRLGRAPSEGEIAKELKMDLEAYQSMLQEIQGCQLLYVEDF 146
            +H +                +GR P   E+A+ ++M  +  + +L+       +  E  
Sbjct: 465 PVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLK-------IAKEPI 517

Query: 147 AKDDPDNPFLDIHSKDARRDRRGGDDPLEQLLESGFRHQLVDAISALPERDQLLLNLYYE 206
           + + P     D H  D   D    + PL+    +  +    D ++ L  R+  +L + + 
Sbjct: 518 SMETPIGDDEDSHLGDFIEDTT-LELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFG 576

Query: 207 EELN----LREIGAILEVSQSRVCQLHSQAISRLR 237
            ++N    L E+G   +V++ R+ Q+ ++A+ +LR
Sbjct: 577 IDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611