Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

Subject, 311 a.a., DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like from Synechococcus elongatus PCC 7942

 Score = 74.3 bits (181), Expect = 3e-18
 Identities = 71/242 (29%), Positives = 115/242 (47%), Gaps = 23/242 (9%)

Query: 6   GTIEKSHLLAQHQPLVRRIALQMMAKLPASVELDDLIQAGMLGLLDASSRYQDNRGAQFE 65
           G   K+ +L  +  LV  +A +   +    +EL DLIQ G LGL  A  ++    G +F 
Sbjct: 71  GQRAKTKMLKANLRLVVSVAKKYQNQ---GLELLDLIQEGSLGLERAVEKFDPALGYKFS 127

Query: 66  TFVSQRIRGAMLDELRANDWGSRGLR------QSARGIEKAIHALGHRLGRAPSEGEIAK 119
           T+    IR +M    RA D  +R +R      +    I+K    L H+L R PS  EIA+
Sbjct: 128 TYAYWWIRQSMT---RAIDNHARTIRLPIHVSEKISRIKKMTRELTHQLKRLPSRAEIAE 184

Query: 120 ELKMDLEAYQSMLQEIQGCQLLYVEDFAKDDPDNPFLDIHSKDARRDRRGGDDPLEQLLE 179
            LK+ L+  + +L +   C  L  +  A+ D    FL     D +       +P++ +  
Sbjct: 185 ALKLPLQDVEMLLSQSTPCTSLDAQ--ARGDDGRSFLGDLIPDPK-----SLEPMDAMDR 237

Query: 180 SGFRHQLVDAISALPERDQLLLNLYY----EEELNLREIGAILEVSQSRVCQLHSQAISR 235
                Q+   ++ L ER+Q +L L +     E+  L EIG  L VS+ R+ Q+ ++A+ +
Sbjct: 238 HIQHEQISTWLAHLTEREQQVLQLRFGLHDGEQHTLAEIGRRLNVSRERIRQVEARALQK 297

Query: 236 LR 237
           LR
Sbjct: 298 LR 299