Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

Subject, 616 a.a., RpoD family RNA polymerase sigma factor (RefSeq) from Shewanella loihica PV-4

 Score = 57.4 bits (137), Expect = 7e-13
 Identities = 49/215 (22%), Positives = 96/215 (44%), Gaps = 35/215 (16%)

Query: 40  DLIQAGMLGLLDASSRYQDNRGAQFETFVSQRIRGAMLDELRANDWGSRGLRQSARGIEK 99
           DLIQ G +GL+ A  +++  RG +F T+ +  IR A+          +R +   AR I  
Sbjct: 406 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI----------TRSIADQARTIRI 455

Query: 100 AIHALG-------------HRLGRAPSEGEIAKELKMDLEAYQSMLQEIQGCQLLYVEDF 146
            +H +                +GR PS  E+A+ + M  +  + +L+       +  E  
Sbjct: 456 PVHMIETINKLNRISRQMLQEMGREPSPEELAERMLMPEDKIRKVLK-------IAKEPI 508

Query: 147 AKDDPDNPFLDIHSKDARRDRRGGDDPLEQLLESGFRHQLVDAISALPERDQLLLNLYYE 206
           + + P     D H  D   D    + PL+       ++   + ++ L  R+  +L + + 
Sbjct: 509 SMETPIGDDEDSHLGDFIEDTT-LELPLDSATGESLKNATHEVLAGLTAREAKVLRMRFG 567

Query: 207 EELN----LREIGAILEVSQSRVCQLHSQAISRLR 237
            ++N    L E+G   +V++ R+ Q+ ++A+ +LR
Sbjct: 568 IDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 602