Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

Subject, 590 a.a., RNA polymerase sigma-70 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 58.9 bits (141), Expect = 2e-13
 Identities = 55/245 (22%), Positives = 109/245 (44%), Gaps = 38/245 (15%)

Query: 10  KSHLLAQHQPLVRRIALQMMAKLPASVELDDLIQAGMLGLLDASSRYQDNRGAQFETFVS 69
           K  L+  +  LV  IA +   +    ++  DLIQ G +GL+ A  +++  RG +F T+ +
Sbjct: 353 KQELIRSNLRLVVSIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYAT 409

Query: 70  QRIRGAMLDELRANDWGSRGLRQSARGIEKAIHA-------------LGHRLGRAPSEGE 116
             IR A+          +R +   AR I   +H              L   LGR P+  E
Sbjct: 410 WWIRQAI----------TRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEE 459

Query: 117 IAKELKMDLEAYQSMLQEIQGCQLLYVEDFAKDDPDNPFLDIHSKDARRDRRGGDDPLEQ 176
           IA+ +   ++  + +L+       +  E  + + P     D    D   D++    P E+
Sbjct: 460 IAERMDYPIDKVKKVLK-------IAKEPISLETPIGDEEDSSLGDFIEDKK-AVAPAEE 511

Query: 177 LLESGFRHQLVDAISALPERDQLLLNLYY----EEELNLREIGAILEVSQSRVCQLHSQA 232
           ++ +    Q+   ++ L  R++ +L   +    + +  L E+G +  V++ R+ Q+ ++A
Sbjct: 512 VVNTKLGEQIASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKA 571

Query: 233 ISRLR 237
           + +LR
Sbjct: 572 LRKLR 576