Pairwise Alignments

Query, 286 a.a., Flagellar motor rotation protein MotA from Variovorax sp. SCN45

Subject, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

 Score = 47.8 bits (112), Expect = 3e-10
 Identities = 59/271 (21%), Positives = 114/271 (42%), Gaps = 34/271 (12%)

Query: 8   LVVIGAVFGGYA------LMGGHFGVLFQPVE-LLMIGGSALGAFIAGNNGKTIKATIKE 60
           L  +  + GG A      ++GG   +    V  L+++GGS     +    G+   A    
Sbjct: 3   LATLVGLIGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAA--- 59

Query: 61  LPLLLRSSKHNRQLYMDLLALLYELLAKARKEGMMKLETDVEDPGSSEIFQRYPNIMAHE 120
             +  ++         DL+A + E+   ARK G + LE               PN    +
Sbjct: 60  -KIAGKAFMFKADAPEDLIAKIVEMADAARKGGFLALEE-----------MEIPNPFMQK 107

Query: 121 GITVFLCDYLRLVISGNTDAHEIEALMDHEIETIRHEAEVPGHSLSRV-ADALPALGIVA 179
           GI         L++ G+ DA  + A +  +I  +  E    G  + R   D  PA+G++ 
Sbjct: 108 GID--------LLVDGH-DADVVRATLQKDI-VLTDERHSKGTQVFRAFGDVAPAMGMIG 157

Query: 180 AVMGVVHALASADLPPSEMGALIAHAMVGTFLGVLLAYGFVSPLATLIEQKVEEGMKIYQ 239
            ++G+V  L++ D  P  +G  +A A++ T  G +L+     P+A  +  + ++     +
Sbjct: 158 TLVGLVAMLSNMD-DPKSIGPAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRR 216

Query: 240 CAKVTLLASLNGYAPQLAVEFGRKVLFSTER 270
                +LA  +G  P++   + +  L +++R
Sbjct: 217 LIMDGVLAIQDGQNPRVIDSYLKNYLNASKR 247