Pairwise Alignments

Query, 481 a.a., Flagellar cap protein FliD from Variovorax sp. SCN45

Subject, 456 a.a., flagellar hook-associated protein FliD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  191 bits (485), Expect = 4e-53
 Identities = 148/487 (30%), Positives = 241/487 (49%), Gaps = 43/487 (8%)

Query: 4   ISSLGVGANLDLATLLTQLQTAESQPLVALQAKAK-SYTSKLSAYGTIQSALGTLQAAAK 62
           IS+ G+G+ LD++ ++  L  AE  P  A+  K + S  +K+SA GT++SAL T Q A K
Sbjct: 3   ISATGMGSGLDISNIVKVLVDAEKAPKEAMFNKTEDSIKAKVSAMGTLKSALSTFQDAVK 62

Query: 63  KLGDPTLFQSVTGTPTVSGILSASSTDVSSAGNYTIDVGQLAQAQTLVSAGQADSKTAIG 122
           KL           + +    LSA +   + AG+Y I V Q+A    +     AD+   +G
Sbjct: 63  KLQTGDALNQRKISVSTDAYLSAKAEKTAQAGSYGIKVEQVATNHKIAGTNVADATQPVG 122

Query: 123 SGKITIDFGAISGGTLNATTGQYTGATFTADSSQPAKSITIDSSNNTLEGIRDAINGAK- 181
            G +   FG               G +F+ D +          + ++L  I   +N A  
Sbjct: 123 EGSLA--FGV-------------NGKSFSVDIA----------ATDSLAEIAKKVNEASD 157

Query: 182 -AGVTAAIVNDGSGTPNRLVLTSSATGEKSSMRISVDGDAALQGLLSNDPAGSQNLKQTA 240
             GVTA ++   +G+  RLV +++ TGE + + ++    +   G    D  GS N     
Sbjct: 158 NVGVTATVITSDAGS--RLVFSANKTGEDNQISLTATNTS---GSGVTDMFGSGNTSTLQ 212

Query: 241 AAQNAKLNVNGIDVVSATNTVKDAIQGTTLTLVGTG---KTGLAMKENSAGVKTAITDFV 297
            A+NA L ++G  V S +N VK+AI G TL L        T + +++++  VKT +  FV
Sbjct: 213 DAKNAVLYIDGQKVTSQSNEVKNAITGVTLNLTNADVAKTTTVKIEQDNEAVKTNVQAFV 272

Query: 298 KAYNSLQSTAKTLTAYDADTKTAAALVGDSTLRNLQTRIRQALT--TPQAGGANDMKVLT 355
            AYNSL +T   +++YD D KTAAAL GDS +R++++++R   +   P A G +    L 
Sbjct: 273 DAYNSLVTTIDKMSSYDKDKKTAAALQGDSMIRSIESQLRSVASGRVPTADGGS--IALY 330

Query: 356 EIGVAFQKDGTLAVDSDKLDKALAANLKGVANLFSSATGSTGGYGKQIDAIVTDLNTNAL 415
           +IG+   + G L+VD  KL+KAL  ++  V  LF  AT   G   +  D   + + ++ L
Sbjct: 331 DIGIKADRYGKLSVDDTKLNKALTEDMSSVEALF--ATPDKGLANRFNDLANSYVKSSGL 388

Query: 416 KV-ASDGVTSTIKKLDDQYDAMQVRVDATVDRYRKQFNQLDVLINNLNNTKNYLTQQFEA 474
                   T+   +L DQ  A  +++D    R  KQFN +D+++  LN   + L  +  +
Sbjct: 389 IADRQSSYTTQQSRLADQRAAFTLKMDQLTARLTKQFNAMDLVVGKLNQQSSGLVDRLNS 448

Query: 475 MSGSSSK 481
           + G+  K
Sbjct: 449 LPGAVKK 455