Pairwise Alignments

Query, 265 a.a., Flagellar biosynthesis protein FliR from Variovorax sp. SCN45

Subject, 267 a.a., Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

 Score = 68.2 bits (165), Expect = 2e-16
 Identities = 57/218 (26%), Positives = 106/218 (48%), Gaps = 13/218 (5%)

Query: 27  MLALVSTAPIFAE-SWVPRQVKVGIAAMLTLVISPL-----IG-PFPAVPVVSAGGLWII 79
           +L +   APIF    ++   V  G+A    +V+  L     +G P PA+  ++  GL  +
Sbjct: 17  LLGVARLAPIFFMLPFLNSGVLTGVARQAVIVLVALGFWAYVGVPTPALDSLAFLGL--M 74

Query: 80  VQQVLIGVAMGFAMRMVFTAVLAAGEYIGLQMGLSFASFYDPMSRGSTMVVSRLLNMLAT 139
           +++V IGV +G  +   F  + A G  I  Q G   +S  DP +   T  ++  L + A 
Sbjct: 75  LREVSIGVLLGVLLCWPFWVLHAMGNLIDNQRGAMLSSTVDPANGVDTSELANFLQLFAA 134

Query: 140 LIFLALDGHLLIVNALAESFQ-TLPISDGPLVAGGWMFLVLAGGEIFASGLLLSLPLITA 198
            ++L   G LL++  +A+S++   P +D  +       L+     + +  L++S P++  
Sbjct: 135 AVYLEGGGMLLMLETVAQSYRICAPANDCAIHLSALHALL---DVLVSKTLVISAPVVAT 191

Query: 199 LLTLNLAMGILNRASPQFSIFAVGFPLTLLAGIFMLQL 236
           LL     +G+L+R +PQ + F+V   +  L  + +L L
Sbjct: 192 LLVSEALLGLLSRYAPQMNAFSVSLTVKSLVALVVLML 229