Pairwise Alignments

Query, 337 a.a., TRAP-type transport system, periplasmic component from Variovorax sp. SCN45

Subject, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  141 bits (355), Expect = 3e-38
 Identities = 94/315 (29%), Positives = 152/315 (48%), Gaps = 5/315 (1%)

Query: 9   LRTAAAASTLALPLRQALAQKNAFNYKYANNLPVSHPMNLRAKEMADAIRAETNGQVDIQ 68
           ++T    +   L L  A +   A   K      V       AK +AD +   + G++ + 
Sbjct: 1   MKTINKITIAILTLSAAASVNAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLA 60

Query: 69  IFPNNQLGSDTDVLSQLRSGGVEFFTLSGLILSTLVPSASISGVGFAFPDYASVWKAMDG 128
           ++P+ QLG D  +L QL  G ++        +   +P A    + +   D+  + +  + 
Sbjct: 61  LYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFES 120

Query: 129 DLGSHIRTQ-IAKANIVAMDKIWDNGFRQITSSSKPIASPADLKGFKIRVPVSPLWTSMF 187
           D G  +R + + K N  A+D  W NG R+ T+S++P+ S  D KG K+RVP +    +  
Sbjct: 121 DFGQGVRDEMLQKFNWRALDT-WYNGTRE-TTSNRPLNSIEDFKGLKLRVPNAKQNLNYA 178

Query: 188 KALEASPTSINFAEVYSALQTKIVDGQENPLAIISTAKLYEVQKYCSMSNHMWDGFWFLA 247
           K   ASPT ++F+EVY ALQT  VDGQENPL  I T K YEVQK  +M++H+ +    + 
Sbjct: 179 KLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVII 238

Query: 248 NRRAWDKMPADLQAIVAKHINAAGMRERADVAELNANLQKELSAKGMQINQPDPAAFRDQ 307
           +   W K+    + I+ K +   G      V    A L     ++G+ +  PD   FR+ 
Sbjct: 239 SESTWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYPDLEPFREA 298

Query: 308 LRKAGFYAEWKSKYG 322
           ++    Y E+ S  G
Sbjct: 299 MQP--LYKEFDSNIG 311