Pairwise Alignments

Query, 337 a.a., TRAP-type transport system, periplasmic component from Variovorax sp. SCN45

Subject, 334 a.a., TRAP-type periplasmic solute-binding protein from Sinorhizobium meliloti 1021

 Score =  151 bits (382), Expect = 2e-41
 Identities = 87/293 (29%), Positives = 150/293 (51%), Gaps = 2/293 (0%)

Query: 5   RRTVLRTAAAASTLALPLRQALAQKNAFNYKYANNLPVSHPMNLRAKEMADAIRAETNGQ 64
           R+ +L T A A  L+     A A+ N  N + +N +   HP+    K M   +  ++ G+
Sbjct: 2   RKLLLATTAIAFGLSAAA-PAFAEFNDRNIRVSNGINEDHPVGNGIKAMQACLDQKSGGK 60

Query: 65  VDIQIFPNNQLGSDTDVLSQLRSGGVEFFTLSGLILSTLVPSASISGVGFAFPDYASVWK 124
           + +  F    LG D      LRSG  E    S   L  ++P+  +  + F F +    + 
Sbjct: 61  LKLTAFWGGALGGDLQATQALRSGVQEAVVTSSSPLVGIIPALGVFDLPFLFANAQEAYT 120

Query: 125 AMDGDLGSHIRTQIAKANIVAMDKIWDNGFRQITSSSKPIASPADLKGFKIRVPVSPLWT 184
            +DGD G  +  ++  A +V +   W+NGFR +++S +P+    D +G K+RV  + ++ 
Sbjct: 121 VLDGDFGDMMNEKLEAAGLVNL-AYWENGFRNLSNSVRPVTKWEDFEGMKVRVMQNNIFL 179

Query: 185 SMFKALEASPTSINFAEVYSALQTKIVDGQENPLAIISTAKLYEVQKYCSMSNHMWDGFW 244
             F+ L A+ T + F EV+SAL+TK +D QENP   I T+K +EVQKY + +NH +  F 
Sbjct: 180 DTFQNLGANATPMAFGEVFSALETKAIDAQENPYVTIDTSKFFEVQKYVTETNHAYTPFL 239

Query: 245 FLANRRAWDKMPADLQAIVAKHINAAGMRERADVAELNANLQKELSAKGMQIN 297
           FL ++  +D    + QA + +        ER  + +LN    +++   G+++N
Sbjct: 240 FLFSKPIFDSYTPEEQAALRECAVVGRDEERKVIQDLNKKSLEKIKEAGLEVN 292