Pairwise Alignments

Query, 337 a.a., TRAP-type transport system, periplasmic component from Variovorax sp. SCN45

Subject, 338 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  149 bits (376), Expect = 1e-40
 Identities = 85/295 (28%), Positives = 152/295 (51%), Gaps = 1/295 (0%)

Query: 4   NRRTVLRTAAAASTLALPLRQALAQKNAFNYKYANNLPVSHPMNLRAKEMADAIRAETNG 63
           +R T L    A     +    ALA+      K+A+     HP     ++ A+ ++ ++ G
Sbjct: 3   DRLTKLTLGLAVPLALMTAGPALAEIRDQTVKFASANNKGHPQVTGMEKFAELVKEKSGG 62

Query: 64  QVDIQIFPNNQLGSDTDVLSQLRSGGVEFFTLSGLILSTLVPSASISGVGFAFPDYASVW 123
           ++++++FP   LG D   +S L+ G +E   L+  IL++ V       + F F       
Sbjct: 63  KIEVKLFPGGTLGGDVQTVSALQGGVIEMTVLNAGILASNVKEFGAVDLPFLFDSGEEAD 122

Query: 124 KAMDGDLGSHIRTQIAKANIVAMDKIWDNGFRQITSSSKPIASPADLKGFKIRVPVSPLW 183
           K MDG  G+ +  ++    +V +   W+ GFR +T++  P+    D+KG KIR   SP+ 
Sbjct: 123 KVMDGPFGTSLMERLPATGLVGV-AYWELGFRNLTNNRHPVTKLEDIKGLKIRTIQSPIP 181

Query: 184 TSMFKALEASPTSINFAEVYSALQTKIVDGQENPLAIISTAKLYEVQKYCSMSNHMWDGF 243
             +F AL A+   + + E+Y+AL+T  VDGQENP A I  AK YEVQKY +++ H ++  
Sbjct: 182 VELFNALGANAVPLPYTELYTALETGTVDGQENPSANIINAKFYEVQKYMTLTRHQYNPQ 241

Query: 244 WFLANRRAWDKMPADLQAIVAKHINAAGMRERADVAELNANLQKELSAKGMQINQ 298
             L +++ WD +  + + ++ +    A   +R    E +A   +E+   GM++++
Sbjct: 242 IVLVSKKFWDGLNDEEKTVLQQAAVEARDFQRKVSREQDAAALEEIRKTGMEVSE 296