Pairwise Alignments

Query, 838 a.a., ABC transporter, fused permease protein from Variovorax sp. SCN45

Subject, 833 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score =  376 bits (966), Expect = e-108
 Identities = 260/850 (30%), Positives = 425/850 (50%), Gaps = 36/850 (4%)

Query: 5   LRLGWRTLWRDLRAGELRLLIVAVLLAVAALTAVGFFADRLKGGLQRDARQLLGGDAVVV 64
           L L WR   R+L+ G+L L+I+A+ LAV +++ +   ++RL+  +   A Q +  D ++ 
Sbjct: 3   LNLAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAINGQATQFIAADRIID 62

Query: 65  SDNPTPDAFVAQAKSLGLEGTGTYGFPTMARAEDAQGGASKLVALKAVTAGYPLRGSLQT 124
           S      + +A+A  LGL+      F +M  A    G   +LV ++AV +GYPL+G ++ 
Sbjct: 63  SPVQIDASILAKADELGLKHVTNMQFNSMVYA----GDKFQLVTVRAVESGYPLKGDIKL 118

Query: 125 SATLDGPGAVTRDIPPAGEVWVDASLLDSLGLKIGDTLLLGDTGLRVGRVITLEPDRGAG 184
            A  +G     + +P A EVW ++ L   LG     TL LG++  R+ + I+  PD G  
Sbjct: 119 KAA-NGQDEKAQGLPHADEVWFESRLGGLLGYP--QTLELGNSEFRLSQEISRLPDAGFN 175

Query: 185 FMSFSPRVMLNQADVARTALVQPASRVGYRYAVAGNDAAVKRFTDWADATLKKGELRGVR 244
             + SP V++   DVA+T ++QP SRV Y Y   G ++A+  F +     L   +    R
Sbjct: 176 PFASSPVVLMRIEDVAKTGVIQPGSRVTYLYQFVGEESALSAFENSVKPLLNNSQ----R 231

Query: 245 LDSFESGRPEMRQTLDRAEKFLSLVALLAALLSAVAVALAARGFAASHLDDCAMLRVLGQ 304
               +SG   +   + RAE+FL L +LL   L+  A+ +AA+ +   H D  AML+  G 
Sbjct: 232 WVDVQSGDSPIAGAVKRAERFLLLASLLGIALACAAIGIAAQRYCQRHYDVVAMLKTFGA 291

Query: 305 SQRTIAAAYTFEFAVIGVVASGLGVAIGFAVHYVFVLLLSGLVETALPAATLWPVAFGLG 364
           S   I   +     ++ +    LG+  G  +      LL   +    P  T  P+  G+ 
Sbjct: 292 SSTQIRRLFGIHLLLVTLFGIVLGLIGGALLDLGINQLLPPEIAAYSPPLTR-PLLLGIS 350

Query: 365 MGLTLLFAFGLPPVLQLARVPPLRVIRRDVGGLKPASLAVLGVGVAGFAALLMAASSDIK 424
            GL   F F   P+++L  +PPLRV++R + GL+      L + +   A L    S    
Sbjct: 351 TGLISAFMFSAYPLMRLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMALLGYLYSQSWA 410

Query: 425 LGLIAVGGFAGAVAVFALLSWLAVKVLRRSVNETTAPRWLVLATRQISARPAYAVVQVSA 484
           L L  V        + ++L ++ +++      +TT P  L LA  +  AR     VQ+  
Sbjct: 411 LTLTVVAAVLLLGVLLSILGFVMIRLGHSVGMKTTNPLQLALAGLRRRARQN--AVQLVG 468

Query: 485 LAVGLLALVLLVLLRTDLVASWRQATPPDAPNRFVINVMPDQSEAFQKSLRDAGVGKFDW 544
            +  L+ L+ ++ LR DL+  W++  P +APN F++N+ PD ++     +   G+   D 
Sbjct: 469 FSAALVLLLTILALRQDLLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMAQKGIAATDI 528

Query: 545 YPMIRGRLVAINDKPVTPDDYTE--DRAKRLVDREFNLSNSVEAPAHNSITAGKWTPDAK 602
           YP+IRGRL  IN + +  D+  E  ++ +  + RE NL+     PA+N +  G +   A 
Sbjct: 529 YPVIRGRLTQINGETLISDEQAEAGEKGRVGISRELNLTWRNTLPANNELVEGHFN-QAA 587

Query: 603 NEVSVEEGLAETLGLKLGDMLRFDIGGMQNDARITSLRKVDWGSLHANFFVMYTVASLAD 662
           +EVSVE G+AE LGLKLGD L + I   +   ++ S+R V W ++  NFF+++T  +LA 
Sbjct: 588 DEVSVESGVAERLGLKLGDTLTYMIDNQELKVKVASIRAVHWETMQPNFFMIFTQEALAP 647

Query: 663 VPVTYMGAF----RAPETRGFDN-------ALVRSYPNVTNVDMSATINQVQRVLDQVIR 711
              T M +F    +  + +G D         L++ +P V+ +D+ A + Q++++++QV  
Sbjct: 648 FAYTSMASFYLDDKKTDVQGSDAPKSTVILELIQQFPTVSIIDVGAMVGQLRQIIEQVSL 707

Query: 712 AVEFLFGFTLAAGLVVLFAAVTATREERAREFAVMRAVGARASLLRQVQRAELAGVGLLA 771
           ++  +    L A  +VL A   A    R RE AV+R  GA   LLR     E A +G +A
Sbjct: 708 SLTLVLVLVLLASSLVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGLEFALLGGIA 767

Query: 772 GFLASIVASVIGWALARYVFEFS----WTASPVVPLAGALAGAVLALGAGWWGLRDVLRR 827
           G LA IVA    + L   VFE +    W    + P+ GAL  A+L    G W  R +L +
Sbjct: 768 GVLAVIVAEFALYLLKTQVFELNVYMHWPWWGIAPVCGALLVALL----GVWRCRQLLNQ 823

Query: 828 PVVDTLRRAA 837
              + L+  A
Sbjct: 824 SCAELLKAGA 833