Pairwise Alignments
Query, 704 a.a., Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.2.8) from Variovorax sp. SCN45
Subject, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056
Score = 53.5 bits (127), Expect = 2e-11
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 108 MYVTASWSVVHAIDTRTGQKLWTFDPQVDRSKGFKGCCDVVNRGVAIHEGKVYVAAFDGR 167
++V + VV A+D + G+ +WT D +++ S G G+ GK+++ + +G
Sbjct: 70 VFVASRDGVVKALDPQNGKVIWTTDLEIEGSARLSG-------GITAAFGKLFIGSENGV 122
Query: 168 LIALDAATGQKVWEKDTLEGQKGSYTITGAPRVFKGKVIIGNGGAEYGVRGFVTAYDAKT 227
+ ALDA TG+ +W +EG+ + AP VI+ RG + A + +
Sbjct: 123 VNALDAETGEPLW-ASAIEGE-----VLAAPAADNNIVIVNTS------RGALIALNQED 170
Query: 228 GEQKW 232
G QKW
Sbjct: 171 GAQKW 175
Score = 48.1 bits (113), Expect = 8e-10
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 33/154 (21%)
Query: 85 LVWSYDLESTRG---------VEATPLVVDGIMYVTASWSVVHAIDTRTGQKLWTFDPQV 135
L+W + +G V+A+PLV+ G ++ + AID R+GQ +W
Sbjct: 218 LIWQQPVGQPKGATEIDRLVDVDASPLVIGGTLFTVGFNGQLIAIDLRSGQPIW------ 271
Query: 136 DRSKGFKGCCDVVNRGVAIHEGKVYVAAFDGRLIALDAATGQKVWEKDTLEGQKGSYTIT 195
+ + D+ G ++Y+ L+A+D +G ++W LE + +
Sbjct: 272 --KRNYSSATDMATDG-----SRLYLVTDKDHLVAVDTRSGTELWSNTQLE-----HRLL 319
Query: 196 GAPRVFKGKVIIGNGGAEYGVRGFVTAYDAKTGE 229
AP++ +++G+ G++ D +GE
Sbjct: 320 TAPKMIDDYLVVGD------AEGYLHWIDRNSGE 347
Score = 43.5 bits (101), Expect = 2e-08
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 158 KVYVAAFDGRLIALDAATGQKVWEKDTLEGQKGSYTITGAPRVFKGKVIIGNGGAEYGVR 217
KV+VA+ DG + ALD G+ +W D LE +GS ++G GK+ IG+
Sbjct: 69 KVFVASRDGVVKALDPQNGKVIWTTD-LE-IEGSARLSGGITAAFGKLFIGS------EN 120
Query: 218 GFVTAYDAKTGEQKW 232
G V A DA+TGE W
Sbjct: 121 GVVNALDAETGEPLW 135
Score = 37.7 bits (86), Expect = 1e-06
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 485 GRLVAWDPVAQKEAWGVDYV---SPWNGGTLTTAGNLVFQGTADGRLLAYDARTGEKLWE 541
G + A DP K W D S G +T A +F G+ +G + A DA TGE LW
Sbjct: 77 GVVKALDPQNGKVIWTTDLEIEGSARLSGGITAAFGKLFIGSENGVVNALDAETGEPLWA 136
Query: 542 TPTGTGVVAAPS 553
+ V+AAP+
Sbjct: 137 SAIEGEVLAAPA 148
Score = 37.7 bits (86), Expect = 1e-06
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 47/190 (24%)
Query: 85 LVWSYDLESTRGVEATPLVVDGI------MYVTASWSVVHAIDTRTGQKLW--TFDPQVD 136
++W+ DLE +E + + GI +++ + VV+A+D TG+ LW + +V
Sbjct: 89 VIWTTDLE----IEGSARLSGGITAAFGKLFIGSENGVVNALDAETGEPLWASAIEGEVL 144
Query: 137 RSKGFKGCCDVVN--RG--VAIHE----------------------------GKVYVAAF 164
+ +VN RG +A+++ G V+
Sbjct: 145 AAPAADNNIVIVNTSRGALIALNQEDGAQKWTISTEVPNLTLRGDSRPTAVAGGVFWGTP 204
Query: 165 DGRLIALDAATGQKVWEKDTLEGQ-KGSYTITGAPRVFKGKVIIGNGGAEYGVRGFVTAY 223
GRL A A GQ +W++ GQ KG+ I V ++IG G G + A
Sbjct: 205 SGRLAAAIAERGQLIWQQPV--GQPKGATEIDRLVDVDASPLVIGGTLFTVGFNGQLIAI 262
Query: 224 DAKTGEQKWR 233
D ++G+ W+
Sbjct: 263 DLRSGQPIWK 272
Score = 31.6 bits (70), Expect = 7e-05
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 513 TTAGNLVFQGTADGRLLAYDARTGEKLWETPTGTGVVAAPSTYMVD 558
T VF GT GRL A A G+ +W+ P G A +VD
Sbjct: 193 TAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGATEIDRLVD 238
Score = 30.8 bits (68), Expect = 1e-04
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 485 GRLVAWDPVAQKEAWGVDYVSPWNGGTLTTAGNLVFQGTADGRLLAYDARTGEKLW-ETP 543
G+L+A D + + W +Y S + + T G+ ++ T L+A D R+G +LW T
Sbjct: 257 GQLIAIDLRSGQPIWKRNYSSATD---MATDGSRLYLVTDKDHLVAVDTRSGTELWSNTQ 313
Query: 544 TGTGVVAAPSTYMVDGKQYVSVAVGW 569
++ AP M+D V A G+
Sbjct: 314 LEHRLLTAPK--MIDDYLVVGDAEGY 337
Score = 30.4 bits (67), Expect = 2e-04
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 485 GRLVAWDPVAQ-KEAWGVDYVSPWNGGTLTTAGNLVFQGTADGRLLAYDARTGEKLWE 541
G+L+ PV Q K A +D + + L G L G +G+L+A D R+G+ +W+
Sbjct: 216 GQLIWQQPVGQPKGATEIDRLVDVDASPLVIGGTLFTVGF-NGQLIAIDLRSGQPIWK 272