Pairwise Alignments

Query, 426 a.a., Sigma-54 activated regulatory protein from Variovorax sp. SCN45

Subject, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score = 74.7 bits (182), Expect = 7e-18
 Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 2/226 (0%)

Query: 50  VIQSWLRCSRTHADRQRIVPFDAVTPSRLHATLARNRELLE-VARQELAQMENMLAGTDC 108
           ++ SW R  +    +Q       ++ ++L         L++ V+R  L     + A +D 
Sbjct: 13  LVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSDS 72

Query: 109 RVILTDRDGVVVHVSDQPAAAHQPVLRKTARVGVNISERVVGTTAPGIVASTGQACTVDG 168
           R+ILTD+ GV++    Q A   + + +     G    E + GT A G      +  +V G
Sbjct: 73  RLILTDQHGVIIGSWGQ-ARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIG 131

Query: 169 AEHYFDVLGHMQCAAAPIRDVTGRLAGVLDLTAEARRFGFDAASMVALYATAIENRLLQA 228
            +H+      + C+A+PI D TG+L GVLD+T+E ++       +V      +EN+LL  
Sbjct: 132 EQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVENQLLNQ 191

Query: 229 QSSDHLILRFQASPTLLGTPLEALAGIAPDGTIAWLNNAGSRLLGR 274
               H+ +     P+LL +  + +      G I   N    +LL +
Sbjct: 192 IPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQ 237



 Score = 31.6 bits (70), Expect = 7e-05
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 388 TLAAHGGNVSQAARQLRVSRGTLYRRLR 415
           T  A  GN+SQ +R L +SR T+YR+L+
Sbjct: 554 TYQATQGNISQTSRLLGLSRNTIYRKLK 581