Pairwise Alignments

Query, 426 a.a., Sigma-54 activated regulatory protein from Variovorax sp. SCN45

Subject, 653 a.a., Sigma54 Specific Transcriptional Regulator containing GAF, and Fis DNA-binding domains (NCBI) from Rhodospirillum rubrum S1H

 Score =  109 bits (273), Expect = 2e-28
 Identities = 102/341 (29%), Positives = 146/341 (42%), Gaps = 19/341 (5%)

Query: 29  ALARRQFFEEG--VRPSGLVGEAVIQSWLRCSRTHADRQRIVPF------DAVTPSRLHA 80
           AL R +   EG  + P+GL+   V  SW R  R       ++PF      D +    L  
Sbjct: 11  ALRRARHLLEGGSLPPAGLIAPTVAHSWERSLRAG-----LLPFSPPAVADHLAARHLAQ 65

Query: 81  TLARNRELLEVARQELAQMENMLAGTDCRVILTDRDGVVVHVSDQPAAAHQPVLRKTARV 140
            + R RELL  AR  +  +     G+D  VIL D +GV++      AA  +   R   + 
Sbjct: 66  AVERRRELLMRARPVMDYLHAQTKGSDSVVILADDNGVLIEALGD-AAFVERAERVALKP 124

Query: 141 GVNISERVVGTTAPGIVASTGQACTVDGAEHYFDVLGHMQCAAAPIRDVTGRLAGVLDLT 200
           G +  ER  GT A G      Q   V G EH+F+    + CAAAPI    GR+ GVLD++
Sbjct: 125 GASWHERHRGTNAIGTALVEAQPVAVHGGEHFFEHNRFLTCAAAPIAGPDGRVLGVLDIS 184

Query: 201 AEARRFGFDAASMVALYATAIENRLLQAQSSDHLILRFQASPTLLGTPLEALAGIAPDGT 260
              R        +V      IEN+L +A+      +RF      +GT  E +  ++ +G 
Sbjct: 185 GPQRGRHPHTFGLVRAATHMIENKLFEARHEGEYRIRFHPQADGIGTLAEGMVALSEEGL 244

Query: 261 IAWLNNAGSRLLGRLPEAADERDVECLLGHDLASLMRLGRREAAQPLRLASGLGVWVQAR 320
           +   N A    L   P    +  +E LL   +A ++  G R     L LA   G     R
Sbjct: 245 VIGANRAALAFLAITPSDIGKALIEALLPLRMADILDHGHRHPGTTLGLACPGGGRFSLR 304

Query: 321 LRGPDGADFRHAVAMPGEAAPVAIERDAVAAIATAVGTTEG 361
           +     A  R A AMP   AP  ++ DA+A + T   T  G
Sbjct: 305 VEPGWRAVVRPA-AMP---APDRVQ-DALADLDTGDPTMAG 340



 Score = 64.7 bits (156), Expect = 8e-15
 Identities = 34/62 (54%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 362 PADTDTGEAASPAGTLREHSRKLIEDTLAAHGGNVSQAARQLRVSRGTLYRRLRGWCDDA 421
           P+  DT   A PA TLR  S  LIE  +AA GGN+S+AAR+L +SR TLYRR+ GW    
Sbjct: 582 PSGVDTDAGAGPA-TLRAASDSLIERMVAASGGNLSEAARRLGISRNTLYRRMNGWAKPP 640

Query: 422 AP 423
           AP
Sbjct: 641 AP 642