Pairwise Alignments

Query, 396 a.a., D-xylose ABC transporter, permease protein XylH from Variovorax sp. SCN45

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  135 bits (341), Expect = 1e-36
 Identities = 108/368 (29%), Positives = 171/368 (46%), Gaps = 74/368 (20%)

Query: 20  LMCVLLAVMAVAFSVMSGGVFLSPENLYNVAQQTAVVGIVSTVMVLIIVARHIDLSVGSV 79
           L+ +L  V+ V+F   +   F + +NL N+ +QT+V  I++  M L+I+   IDLSVGSV
Sbjct: 35  LIALLFLVVVVSFLNPN---FFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSV 91

Query: 80  MGFVGVLIAYLQYTSGWSWPTACLAGLAVALLVSIYQGWLT-AVLGVPSFVVTLGGLMSF 138
           +   G                A L  + V +LV++    L  A LG  S ++        
Sbjct: 92  LALCGAF-------------AATLVAMEVPVLVAVPTALLAGAALGAISGII-------- 130

Query: 139 RGAAFLVAEGKTQPVNDEFFQRLGGGYDGGIGVTASWVIAGLVAAVLFARMFQKRAARAR 198
                 +A+GK Q                         IA LV   L   +         
Sbjct: 131 ------IAKGKVQAF-----------------------IATLVTMTLLRGV--------- 152

Query: 199 HEMPNEPLWLELLLTAVPAAVVIGFAAVMNHYKIDSKDAPQGIPIPVLIWAVVAIVLSFI 258
                       ++      +  GF    + +         GIP+PV +  VV     ++
Sbjct: 153 -----------TMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVVVFAGAWYL 201

Query: 259 VHRTRFGRYVFAMGGNPDAAALVGIPVKRVTLMLFALLAVLVTIAAIVSIARLNAGTNSL 318
           ++ TRFGRYV+A+GGN  A  L GI V RV + ++A+  +L  +A I+  +RL++   + 
Sbjct: 202 LNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTA 261

Query: 319 GTGMELYVIAAAVIGGTALAGGSGSIFGSVLGALIMQSLDSGMLLLDVPIGKRMVIIGQV 378
           G G EL  IAA V+GGT+L GG G I G+++GALI+  L++ + LLDV    +M+    V
Sbjct: 262 GMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVV 321

Query: 379 LIVAVVFD 386
           +++AV+ D
Sbjct: 322 ILLAVLVD 329