Pairwise Alignments

Query, 396 a.a., D-xylose ABC transporter, permease protein XylH from Variovorax sp. SCN45

Subject, 453 a.a., sugar uptake ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  326 bits (835), Expect = 9e-94
 Identities = 185/423 (43%), Positives = 256/423 (60%), Gaps = 35/423 (8%)

Query: 3   NPTPGWWRRTGIDLRLVLMCVLLAVMAVAFSVMSGGVF----LSPENLYNVAQQTAVVGI 58
           NP   ++R T ID RL+ M   L ++ + F VM+GG+F    L P NL+N+  QT+ V +
Sbjct: 31  NPVKRFFRATEIDTRLLGMVGALIIIWLGFQVMTGGLFDGLFLKPRNLWNLTVQTSSVAV 90

Query: 59  VSTVMVLIIVARHIDLSVGSVMGFVGVLIAYLQ-----------YTSGWSWPTACLAGLA 107
           ++T MVL+IV R+IDLSVGSV+GF G+++  LQ           + + W+   AC  G+A
Sbjct: 91  MATGMVLVIVTRNIDLSVGSVLGFCGMIMGVLQAQVLPQYLGLGHPATWAITLAC--GIA 148

Query: 108 VALLVSIYQGWLTAVLGVPSFVVTLGGLMSFRGAAFLVAEGKTQPVNDEFFQRLGGGYDG 167
           V   +    G + A L VP+F+VTLGGL+ +RGA + V  G+T    D  F+ +GGG +G
Sbjct: 149 VGGAIGALHGSIIAFLNVPAFIVTLGGLLVWRGATWFVTSGQTVAPMDATFRLMGGGTEG 208

Query: 168 GIGVTASWVIAGLVAAVLFARMFQKRAARARHEMPNEPLWLELLLTAVPAAVVIGFAAVM 227
            IG TASW++  L    +   +   R  R R   P  P+W E  L+ +  A+V+G  AV 
Sbjct: 209 SIGATASWIVGSLACIAIVGAILNSRKQRKRFGFPLRPVWAEYFLSILGCALVLGAVAVA 268

Query: 228 NHYKIDSKDAPQ------------------GIPIPVLIWAVVAIVLSFIVHRTRFGRYVF 269
           NHY      A +                  GI IPVL+  VV IV++FI  R RFGRYVF
Sbjct: 269 NHYYWPVNIARRYADANGIAWPDGGLQISHGIAIPVLVAIVVGIVMTFIATRLRFGRYVF 328

Query: 270 AMGGNPDAAALVGIPVKRVTLMLFALLAVLVTIAAIVSIARLNAGTNSLGTGMELYVIAA 329
           A+GGNP+AA L GI  + VT+ +F L+ VL  IAA +S ARLNA TN+ G   ELY IAA
Sbjct: 329 ALGGNPEAAELAGIKTRWVTVKIFTLMGVLCAIAAAISTARLNAATNAQGELDELYTIAA 388

Query: 330 AVIGGTALAGGSGSIFGSVLGALIMQSLDSGMLLLDVPIGKRMVIIGQVLIVAVVFDVLY 389
           AVIGGT+LAGG G+I G+++GAL+MQSL SGM+LL +    + +++G VL+ AV  D +Y
Sbjct: 389 AVIGGTSLAGGVGTIAGAMIGALVMQSLQSGMVLLGIDTPFQRIVVGVVLVTAVWLDTVY 448

Query: 390 RRK 392
           R +
Sbjct: 449 RAR 451