Pairwise Alignments

Query, 340 a.a., D-xylose ABC transporter, substrate-binding protein XylF from Variovorax sp. SCN45

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score = 75.9 bits (185), Expect = 1e-18
 Identities = 73/282 (25%), Positives = 127/282 (45%), Gaps = 11/282 (3%)

Query: 6   TLAAMAFGLTAVG--AMAQTVVGVSWSNFQEERWKTDEAAIKAELEKLGAKYISADAGGS 63
           TL + A   T+V   A AQ  V +  S      + T +   +A+ ++LG   I  D+   
Sbjct: 8   TLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVLDSQND 67

Query: 64  PEKQLGDIEGLMSKGAKALIVLAMDKDAILPAVTKATRQKVPVVAYDR-LIEAPGVFYIT 122
           P K+L ++E L  +G KA+++   D DA+  A+  A R K+PV+  DR       V +I 
Sbjct: 68  PSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGEVVSHIA 127

Query: 123 FDNVEVGRMEAREV-LKVKPKGNYVIIKGSPSDPNADFLRAGQQEVLDASIKKGDIKIVG 181
            DNV  G M    +  K+      + ++G      A   R   +  ++A +K   ++++ 
Sbjct: 128 SDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAA---RERGEGFMNA-VKGSKMQLLA 183

Query: 182 DEYTEGWKPEVAQKNMEQILTKNGNKVDAVVAANDGTAGGAVAALTAKGLRGIPVSGQDA 241
            +  + +        ME +L  N + V AV A ND  A GA+ A+ A G + + + G D 
Sbjct: 184 SQPAD-FDRTKGLNVMENLLAANPD-VQAVFAQNDEMALGALRAIQASG-KSVMIVGFDG 240

Query: 242 DFAALNRIALGTQTATIFKDSRELGREAAIAAIALSQGKPVD 283
               +  +  G   AT+ +    +G      A  + +G+ V+
Sbjct: 241 TDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVE 282