Pairwise Alignments

Query, 329 a.a., DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) from Variovorax sp. SCN45

Subject, 329 a.a., DNA-directed RNA polymerase subunit alpha (RefSeq) from Shewanella loihica PV-4

 Score =  393 bits (1010), Expect = e-114
 Identities = 199/327 (60%), Positives = 249/327 (76%), Gaps = 10/327 (3%)

Query: 3   TTLLKPKTIQVEQLAANKAKVTLEPFERGYGHTLGNALRRVLLSSMVGYSATEVTIAGVL 62
           T  LKP+ + +EQ+   +AKVTLEP ERG+GHTLGNALRR+LLSSM G + TEV I GVL
Sbjct: 6   TEFLKPRLVDIEQVNPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65

Query: 63  HEYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGPVLASDIQTPHDVEIIN 122
           HEYSS +GVQED++ ILLNLKG+   +  +DE  L+L K G GPV A+DI    DV I+N
Sbjct: 66  HEYSSKEGVQEDILEILLNLKGLAVVIEGKDEAMLTLSKSGAGPVTAADITHDGDVTIMN 125

Query: 123 PDHVIAHLSQGGKLDMQIKVEKGRGYVPGTMRRYADEPTKSIGRIVLDASFSPVKRVSYT 182
           PDHVI HL+    + M+I+VE+GRGYVP + R   ++  + IGR+++D+SFSPV R++Y 
Sbjct: 126 PDHVICHLTGNNDISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDSSFSPVARIAYN 185

Query: 183 VESARVEQRTDLDKLLVEIETNGAITAEDAVRASAKILVEQLAVFAQLEGGELAAFDAPT 242
           VE+ARVEQRTDLDKL++++ TNG I  E+A+R SA IL EQL  F +L        D   
Sbjct: 186 VEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELR-------DVTE 238

Query: 243 PRSAQ---QFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKS 299
           P   +   +FDPILLRPVD+LELTVRSANCLKAE I+YIGDL+QRTE ELLKTPNLG+KS
Sbjct: 239 PEQKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 298

Query: 300 LNEIKEVLASRGLTLGMKLESWPPAGL 326
           L EIK+VLASRGL+LGM+LE+WPPA L
Sbjct: 299 LTEIKDVLASRGLSLGMRLENWPPASL 325