Pairwise Alignments

Query, 329 a.a., DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) from Variovorax sp. SCN45

Subject, 329 a.a., DNA-directed RNA polymerase subunit alpha from Klebsiella michiganensis M5al

 Score =  392 bits (1007), Expect = e-114
 Identities = 197/325 (60%), Positives = 252/325 (77%), Gaps = 5/325 (1%)

Query: 3   TTLLKPKTIQVEQLAANKAKVTLEPFERGYGHTLGNALRRVLLSSMVGYSATEVTIAGVL 62
           T  LKP+ + +EQ+++  AKVTLEP ERG+GHTLGNALRR+LLSSM G + TEV I GVL
Sbjct: 6   TEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65

Query: 63  HEYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGPVLASDIQTPHDVEIIN 122
           HEYS+ +GVQED++ ILLNLKG+  ++  +DEV L+L K G GPV A+DI    DVEI+ 
Sbjct: 66  HEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVK 125

Query: 123 PDHVIAHLS-QGGKLDMQIKVEKGRGYVPGTMRRYADEPTKSIGRIVLDASFSPVKRVSY 181
           P HVI HL+ +   + M+IKV++GRGYVP + R +++E  + IGR+++DA +SPV+R++Y
Sbjct: 126 PQHVICHLTDENAAISMRIKVQRGRGYVPASARIHSEEDERPIGRLLVDACYSPVERIAY 185

Query: 182 TVESARVEQRTDLDKLLVEIETNGAITAEDAVRASAKILVEQLAVFAQLEGGELAAFDAP 241
            VE+ARVEQRTDLDKL++E+ETNG I  E+A+R +A IL EQL  F  L           
Sbjct: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEE 245

Query: 242 TPRSAQQFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLN 301
            P    +FDPILLRPVD+LELTVRSANCLKAE I+YIGDL+QRTE ELLKTPNLG+KSL 
Sbjct: 246 KP----EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301

Query: 302 EIKEVLASRGLTLGMKLESWPPAGL 326
           EIK+VLASRGL+LGM+LE+WPPA +
Sbjct: 302 EIKDVLASRGLSLGMRLENWPPASI 326