Pairwise Alignments

Query, 710 a.a., ATP-dependent DNA helicase RecG (EC 3.6.4.12) from Variovorax sp. SCN45

Subject, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

 Score =  221 bits (564), Expect = 1e-61
 Identities = 151/441 (34%), Positives = 227/441 (51%), Gaps = 30/441 (6%)

Query: 225 AWQRIKAEELLAQQLSQLQARLERAAQRAPVLPSPAEPLASSLHAQLLAVLPFGLTGAQQ 284
           AW  +KA    A+++  + A L     +  + P     L    +A   A  PF  T  Q 
Sbjct: 554 AW--VKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQA 611

Query: 285 RVGEEITRDLCREIPMHRLLQGDVGSGKTVVAALAAARAIDAGFQCALMAPTEILAAQHF 344
                +  D+C+   M RL+ GDVG GKT VA  AA  A D G Q A++ PT +LA QHF
Sbjct: 612 MAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHF 671

Query: 345 GKLVGWLDPLLAERGLRVAWLTGSQKKKERDEMSAAVESGEAALVIGTHAVISEKVRFKN 404
                      A   +RV  L+  +  KE+ ++   V  G+  +++GTH ++S ++RF +
Sbjct: 672 ENF----RDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFAD 727

Query: 405 LALAIIDEQHRFGVAQRLALRGKAVGELEPHLLMMSATPIPRTLAMSYYADLDVSTLDEL 464
           L L I+DE+HRFGV Q+  ++       +  +L ++ATPIPRTL M+     D+S +   
Sbjct: 728 LGLLIVDEEHRFGVRQKEKVKAMRA---DVDILTLTATPIPRTLNMAMSGMRDLSII-AT 783

Query: 465 PPGRTPIVTKLVADHRRDEVIDRIHAQIAQGRQVYWVCPLIEESEAVDLRNATETRDELT 524
           PP R   +   V       + + +  +I +G QVY+            L N  ET D++ 
Sbjct: 784 PPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYF------------LHNQVETIDKVA 831

Query: 525 GTLGEPI---QVGLLHSRMPTAEKQAVMAAFTANEIQVLVSTTVIEVGVDVPNASLMVIE 581
             L + +   ++ + H +M   E + VM  F      +LV TT+IE G+DVP A+ ++++
Sbjct: 832 ADLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMD 891

Query: 582 HAERFGLSQLHQLRGRVGRGAAASACVLLYAPGDSGRVGEAARARLKAMA---ETGDGFE 638
            A+  GL+QLHQLRGRVGR    +   LL  P  +  + + A  RL+A+A   + G GF 
Sbjct: 892 RADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKA--ITKDAVKRLEAIASLEDLGAGFT 949

Query: 639 IARRDLEIRGPGEFLGARQSG 659
           +A  DLEIRG GE LG  QSG
Sbjct: 950 LATHDLEIRGAGELLGEEQSG 970