Pairwise Alignments

Query, 406 a.a., Uncharacterized protein with LysM domain, COG1652 from Variovorax sp. SCN45

Subject, 391 a.a., LysM peptidoglycan-binding domain-containing protein from Vibrio cholerae E7946 ATCC 55056

 Score =  130 bits (328), Expect = 5e-35
 Identities = 107/366 (29%), Positives = 169/366 (46%), Gaps = 53/366 (14%)

Query: 37  YPVTPQQRATAQQTAQTGVPLSELAPNAPDEYTIKPGDTLWAISRLYLLRPWRWPELWGM 96
           Y + P    + Q TA    PL+ L PNAP  YT+  GDTLW IS LYL  PW WP LW +
Sbjct: 26  YALLPFTLLSGQVTADEQTPLA-LKPNAPTTYTVVKGDTLWDISALYLDSPWLWPRLWQV 84

Query: 97  NINEIANPHRIYPGQVLYLDKTGGRARLTTTRRGGFSGDGGTIKLSPRTRFDSLAGMALP 156
           N  EI NPH IYPG  L L    G+  L+              KLSP+ R   L   A+P
Sbjct: 85  N-PEIDNPHLIYPGDKLTLFWRDGQPELSLKPMR---------KLSPQVRV--LEKQAVP 132

Query: 157 TLNPSIIEPFLSEPIVVDADTLDSAPRIVAGNDNRVLLSRGDRAYARGNANSPLLEAPGP 216
           T+   ++ P+L    ++    L  + R++  ++ R  L++ D+ Y  G  +         
Sbjct: 133 TVQEGLVLPYLQSDRLMAKTALQGSVRVIGSSEGRQYLTKQDQLYISGVHSE-------- 184

Query: 217 VQSFRVFRSATPLKDPGTGEILGYEAQYLGKARLQRGESTTVETVEDKDVITVVPATVDI 276
            + + ++R     +      ++      +G+  +  G  + +  +E              
Sbjct: 185 -KKWGIYREVAQYQRDDE-VMVALRLVAVGELAMTGGNFSGLSLLE-------------- 228

Query: 277 IASREEIRAGDRLLPE---PPRQL-LSYVPRAPSTQVEGRII-SVYGNAVQFAAQNQVVA 331
               +EI A D  LPE     RQL  ++ P+      E RI+ S+ G+  Q+A QNQVV 
Sbjct: 229 --QNQEILANDIALPEVDLEERQLSTTFYPQPAPAGSEARILGSLEGS--QYAGQNQVVV 284

Query: 332 INKGTRDGIDNGHVLAILKNGETILDRTGA------RKET-IKLPNERIGLLMVFRTFEK 384
           I++G  DG+  G +  + +    +  +  +      R  T ++LP+ ++G LMV R +E+
Sbjct: 285 IDQGRSDGVAQGSMFELYQAAVQVKAKQDSSTFLSERSNTDVQLPSVKVGALMVIRPYER 344

Query: 385 VSYALV 390
            S AL+
Sbjct: 345 FSLALI 350