Pairwise Alignments

Query, 626 a.a., Protein translocase subunit SecD from Variovorax sp. SCN45

Subject, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

 Score =  369 bits (947), Expect = e-106
 Identities = 214/616 (34%), Positives = 356/616 (57%), Gaps = 40/616 (6%)

Query: 1   MNRYPVWKYTIIVIVLLVGLIYALPNFFGEAPAVQVSAAKTVVKVDASTQTR----VEEA 56
           +N Y  WKY ++V  +++  + A+P ++GE P++Q+ +       DA++  R    + + 
Sbjct: 14  INHYSAWKYVVLVTTIIILTLSAIPTWYGEQPSIQLQSK------DATSVLRNVPELTQL 67

Query: 57  LKAAGLTPDLITLDGTSLRARFATTDDQLKARDAVQRALVPDANDPPYTVALNLVSRSPK 116
           L    +  D IT  G +    FA    Q +AR+A+  ALV + +    T+  + VS +PK
Sbjct: 68  LNKQNIQADEITQQGDNTTLVFANETQQSQARNALD-ALVKEGD----TITYSYVSVAPK 122

Query: 117 WLTALHAFPMYLGLDLRGGVDFLLQVDMKGAIDKKAESFASDLRTTFRDKNIRGTAVSRN 176
           WL  L   P+ LGLDLRGGV FLL VD+  A  ++ +S    ++ + R + +RG  V   
Sbjct: 123 WLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAM 182

Query: 177 GQTV-EVSFRDAASLDAAKRLIQDQFQDLSTTDSQDGSNWRLVASIKPEAARRLQDAALK 235
           G    EV      +L   ++ +Q+ ++        D    +L      +     Q A ++
Sbjct: 183 GNDAFEVKTEQPQALSHVRKYLQENYRGWEIRQGSD----QLQVQPSQQNKSEFQTATIQ 238

Query: 236 QNITTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKEILGRTATLEMRMVDESA 295
           QN+  + +RI ELG+ E ++Q+QG   I ++LPGVQD ++AK ++G TA+L         
Sbjct: 239 QNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPT 298

Query: 296 EGRAAELGGGPVPFGSEKFLDRQGRPVIVKKQVLVTGENLTDAQPGFDQQSNQPKVDLTM 355
           + R+         +      D  GRPVI+ K+ +++GE++ +A+ G D      +V++++
Sbjct: 299 DARS---------YDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNMG-MSEVNISL 348

Query: 356 DAKGGRIMRDVSRENYKKRMAMLIFE---KGKGE------VLTAPSINGELGNRFQVSGS 406
           D  GG+IM D S ++  K MA +  E     +GE      V++  +I  +LG++F+++G+
Sbjct: 349 DHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQLGSQFRITGA 408

Query: 407 MTVVEANDLALLLRAGSLAAPMEIIQERTIGPTLGADNIEKGFKSVMYGFLAIMVFMCAY 466
            ++ EA  LALLLRAGSL AP+ I++ERTIG +LG +NI  GF ++  G    + FM  +
Sbjct: 409 GSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALW 468

Query: 467 YALFGLFSSIALAVNLMLLVAILSMLQ-ATLTLPGIAAMALAIGVAIDSNVLINERVREE 525
           Y   G  +++AL VN+  L+ ++++L  A LTLPGIA + L +G+A+D+NVLI ER+R++
Sbjct: 469 YRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 526 LRNGASPQAAIHAGYERAWGTILDSNVTTLIAGIALLAFGSGPVRGFAVVHCIGIVTSMF 585
           L  G +   AI  G++ A+ TILD+N+TT+I  + L + G+GP++GFA+   +G++TSMF
Sbjct: 529 LSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMF 588

Query: 586 SAVFFSRGLVNFWYGQ 601
           S VF SR L+N  +G+
Sbjct: 589 SGVFASRALINLVWGR 604