Pairwise Alignments

Query, 626 a.a., Protein translocase subunit SecD from Variovorax sp. SCN45

Subject, 617 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

 Score =  518 bits (1334), Expect = e-151
 Identities = 281/619 (45%), Positives = 404/619 (65%), Gaps = 25/619 (4%)

Query: 1   MNRYPVWKYTIIVIVLLVGLIYALPNFFGEAPAVQVSAAKTVVKVDASTQTRVEEALKAA 60
           +NRYP+WKY ++++ + V  +YALPN +GE PA+Q++ A+    VD ST   V +AL  A
Sbjct: 2   LNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGA-SVDMSTLDAVTDALNKA 60

Query: 61  GLTPDLITLDGTSLRARFATTDDQLKARDAVQRALVPDANDPPYTVALNLVSRSPKWLTA 120
            L+   I L+  S+  RF  TD Q+ ARD +  AL  D       VALNL   +P WL +
Sbjct: 61  QLSQKSIALENGSILVRFNDTDTQISARDIISEALGKDK-----IVALNLAPSTPYWLES 115

Query: 121 LHAFPMYLGLDLRGGVDFLLQVDMKGAIDKKAESFASDLRTTFRDKNIRGTAVSRNGQTV 180
           + A PM LGLDLRGGV FL++VDM  A++K         R+  RD+ IR  A+      V
Sbjct: 116 IGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAV 175

Query: 181 EVSFRDAASLDAAKRLIQDQFQDLSTTDSQDGSNWRLVASIKPEAARRLQDAALKQNITT 240
           EV+ RDA  L   K L++ + +D++ T S+    + LVA       + +++ A++QNIT 
Sbjct: 176 EVTLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITI 235

Query: 241 LHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKEILGRTATLEMRMVDESAEGRAA 300
           L NR+NELGVAEP++Q+QG  RIVV+LPGVQDTA+AKEILG TATLE R VD+ A+  AA
Sbjct: 236 LRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAA 295

Query: 301 ELGGGPVPFGSEKFLDRQGRPVIVKKQVLVTGENLTDAQPGFDQQSNQPKVDLTMDAKGG 360
               G  P GSE   DR GRPV++KK+V++ G ++TDA    D+   +P+V++++D++GG
Sbjct: 296 --AAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEY-GRPQVNISLDSEGG 352

Query: 361 RIMRDVSRENYKKRMAMLIFE---------KGK------GEVLTAPSINGELGNRFQVSG 405
             M   S++N  K MA +  E         +GK       EV+   +I   LG  F+++G
Sbjct: 353 NKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITG 412

Query: 406 SMTVVEANDLALLLRAGSLAAPMEIIQERTIGPTLGADNIEKGFKSVMYGFLAIMVFMCA 465
             +  EA++LALLLRAG+L AP+ I++ERTIGP++G  NI+ G ++ ++G +A+M+F   
Sbjct: 413 IDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVL 472

Query: 466 YYALFGLFSSIALAVNLMLLVAILSMLQ-ATLTLPGIAAMALAIGVAIDSNVLINERVRE 524
           YY  FG+ ++IAL  NL+L++ ++SM+  AT+TLPGIA + L +G+A+D+NVLI ER+RE
Sbjct: 473 YYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIRE 532

Query: 525 ELRNGASPQAAIHAGYERAWGTILDSNVTTLIAGIALLAFGSGPVRGFAVVHCIGIVTSM 584
           ELR G +PQ AIH GY  A+ TI D+N+TTLI  I L A G+G ++GFAV   IGI+TSM
Sbjct: 533 ELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSM 592

Query: 585 FSAVFFSRGLVNFWYGQKK 603
           F+A+  +R +VN  YG K+
Sbjct: 593 FTAIVGTRCIVNLLYGGKR 611