Pairwise Alignments

Query, 626 a.a., Protein translocase subunit SecD from Variovorax sp. SCN45

Subject, 853 a.a., SecD export membrane protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  343 bits (879), Expect = 2e-98
 Identities = 202/523 (38%), Positives = 307/523 (58%), Gaps = 31/523 (5%)

Query: 115 PKWLTALHAFPMYLGLDLRGGVDFLLQVDMKGAIDKKAESFASDLRTTFRDKNIRGTAVS 174
           P WL       + LGLDL+GG   LL VDM   I  + E+    +RT  R  ++R T ++
Sbjct: 34  PDWLPQNR---ITLGLDLQGGSHLLLAVDMPAVIHDRLETMLESVRTNLRKDSLRYTGLA 90

Query: 175 RNGQTVEVSFRDAASLDAAKRLIQDQFQ--------DLSTTDSQDGSNWRLVASIKPEAA 226
              ++V  +   A  ++ A+  +    Q        D   T   DG   R+  ++     
Sbjct: 91  VRDRSVVFTLASADDIETARGALAPLVQPDEPGKPADYGLTF--DGLTGRI--ALADSGV 146

Query: 227 RRLQDAALKQNITTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKEILGRTATL 286
           +   D A +Q+I  +  RI+E GV EP+I +QG DRI+VQLPGV D  + K +LG+TA +
Sbjct: 147 QAWADKAAQQSIEIVRRRIDETGVNEPMIARQGADRILVQLPGVSDPGRIKRLLGQTAKM 206

Query: 287 EMRMVDESAEGRAAELGGGPVPFGSEKFLD----RQGRPVIVKKQVLVTGENLTDAQPGF 342
              MV + A      LG G VP G          R G  ++V ++V V G +LTDA+P F
Sbjct: 207 TFHMVGDRA------LGDGSVPAGYRLLPSADPARPGEKILVSRKVEVDGSHLTDAKPSF 260

Query: 343 DQQSNQPKVDLTMDAKGGRIMRDVSRENYKKRMAMLIFEKGKGEVLTAPSINGEL-GNRF 401
           DQQ+ Q  V  + D +G R   DV++    K  A+++ +K    V++AP I   + G R 
Sbjct: 261 DQQNGQWVVSFSFDGQGARRFADVTKMAVGKPFAIVLDDK----VVSAPVIREPITGGRG 316

Query: 402 QVSGSMTVVEANDLALLLRAGSLAAPMEIIQERTIGPTLGADNIEKGFKSVMYGFLAIMV 461
           Q+SGS T   ANDLA+LLRAG+L AP+ +++ERT+GP LGAD+I  G  ++  GF+ ++ 
Sbjct: 317 QISGSFTAASANDLAVLLRAGALPAPLTVVEERTVGPDLGADSIRAGMIAISVGFVLVVA 376

Query: 462 FMCAYYALFGLFSSIALAVNLMLLVAILSMLQATLTLPGIAAMALAIGVAIDSNVLINER 521
           +M  +Y LFG F+++AL  NL + +  LS++QATLTLPGIA + L++G+A+D+N+LINER
Sbjct: 377 YMGIFYGLFGWFANVALVFNLAITLGALSLMQATLTLPGIAGLLLSLGMAVDANILINER 436

Query: 522 VREELRNGASPQAAIHAGYERAWGTILDSNVTTLIAGIALLAFGSGPVRGFAVVHCIGIV 581
           +REE + G    A++  G++RA+ TI DSN+TTLI    L + G G +RGFAV   +GI+
Sbjct: 437 IREEAKKGRGVAASMETGFKRAFATIFDSNITTLIKMAILFSIGVGTIRGFAVTISLGII 496

Query: 582 TSMFSAVFFSRGLVNFWYGQKKKLKTVSIGTVWRPNTDGSAVA 624
            SMF+A+  +R L+  W+ ++ K K++ +   +R   D + +A
Sbjct: 497 VSMFTAITVTRLLMVIWF-RRTKPKSLPMANHFRLVPDHTKIA 538



 Score = 59.3 bits (142), Expect = 7e-13
 Identities = 41/173 (23%), Positives = 86/173 (49%), Gaps = 3/173 (1%)

Query: 426 APMEIIQERTIGPTLGADNIEKGFKSVMYGFLAIMVFMCAYYAL-FGLFSSIALAVNLML 484
           A  EI +  ++G ++ A+  + G  ++    +A+++++   +   FG+ + + + +++  
Sbjct: 644 AGSEIRRVDSVGASVSAELFQDGMMALGLAAIAMLIYIWFRFEWQFGVGAVVTMLLDVTK 703

Query: 485 LVAILSMLQATLTLPGIAAMALAIGVAIDSNVLINERVREELR--NGASPQAAIHAGYER 542
            V   ++      L  IAA+   +G +I+  V++ +RVRE LR       +  I      
Sbjct: 704 TVGFFAITGMQFNLTAIAAILTIMGYSINDKVVVYDRVRENLRLYRTMPLRQLIDKSINE 763

Query: 543 AWGTILDSNVTTLIAGIALLAFGSGPVRGFAVVHCIGIVTSMFSAVFFSRGLV 595
             G  + +++ T +A I L  FG   +R FA+V   G+V +  S+VF +  L+
Sbjct: 764 TLGRTVGTSLATFLAIIPLAVFGGEALREFALVLLFGVVLATSSSVFIAAPLL 816