Pairwise Alignments

Query, 254 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 243 a.a., arginine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  107 bits (268), Expect = 2e-28
 Identities = 73/252 (28%), Positives = 120/252 (47%), Gaps = 16/252 (6%)

Query: 1   MNRIRRVISLGLVATAATFALGAQAQNRELTVASSATYAPFAFENKDKQIVGFDIDIINA 60
           M +I     +GLV+ +A       A  +E+     ATYAPF + +++ QI GFD+D+ NA
Sbjct: 1   MKKILLASLIGLVSASA-------AAQQEIKFVMEATYAPFEYMDENNQIQGFDVDLANA 53

Query: 61  IAKQQGLKIKIVNTPFTGIFGALNNGDVDLVISGVTINDKRKQSYDFTPPYF-AARQLIA 119
           + KQ   K    N  F  +  AL     D  IS + I + R +  +F+ PY+  +   ++
Sbjct: 54  LCKQLEAKCSFHNQAFDSLIPALKFKRYDAAISAMDITEARLEQVNFSNPYYDNSAAFVS 113

Query: 120 LPKNSKVTSLKDLAGKKIAVVSASTADDIASREFGKTSPDIRRFESTPLIISELAGGGVD 179
           L    KV     L GK++ V + ST       +          + S      ++  G +D
Sbjct: 114 LA--GKVADQAALKGKRVGVQNGSTHQSFLLEQLSDVV--AVPYSSYQDAFIDMKNGRID 169

Query: 180 AAMGDNGVIAYRVAQNPDLKTIDDK----SFPEEGFGIVVKKGDKALLDKLTAGLAAIRA 235
           +  GD  V+A     + +L  + ++     +   GFGI V K ++ALLD+L A L A++ 
Sbjct: 170 SVFGDTAVVAEWFKGDNNLAYVGERVTNAQYFGNGFGIAVNKDNQALLDQLNAALEAVKE 229

Query: 236 DGSYVTIYKKWF 247
           +G Y  I+ K+F
Sbjct: 230 NGEYAAIFNKYF 241