Pairwise Alignments

Query, 254 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 244 a.a., extracellular solute-binding protein (RefSeq) from Shewanella sp. ANA-3

 Score =  123 bits (309), Expect = 3e-33
 Identities = 79/235 (33%), Positives = 120/235 (51%), Gaps = 8/235 (3%)

Query: 11  GLVATAATFALGAQAQNRELTVASSATYAPFAFENKDK--QIVGFDIDIINAIAKQQGLK 68
           GL  TA     G    N  L V ++A + PF +       +I GFDI++   IAK  G  
Sbjct: 9   GLALTATLLLAGCGKSNDILVVGTNAAFPPFEYVGGQSGDEIKGFDIELAKRIAKDAGKT 68

Query: 69  IKIVNTPFTGIFGALNNGDVDLVISGVTINDKRKQSYDFTPPYFAARQLIALPK-NSKVT 127
           +K+ N  F  +  ALN+G +D + SG+TI  +R+ S +F+ PY+ A Q++ + K N  + 
Sbjct: 69  LKVENMKFDSLIVALNSGKIDFIASGMTITPERQASVNFSEPYYEATQVLLVNKDNDTIH 128

Query: 128 SLKDLAGKKIAVVSASTADDIASREFGKTSPDIRRFESTPLIISELAGGGVDAAMGDNGV 187
           +L D+  K  AV   STAD ++     K + ++  F +    I EL  G VD  + D+  
Sbjct: 129 TLDDIKDKHFAVQLGSTADMMSK----KYTQNVTAFNTGFEAIMELKNGKVDLVLFDSEP 184

Query: 188 IAYRVAQNPDLKTIDDKSFPEEGFGIVVKKGDKALLDKLTAGLAAIRADGSYVTI 242
            A  +A+NPDLK I    FP E +G  V K    LL+ +   L  ++  G Y T+
Sbjct: 185 AANYLAKNPDLKLI-KLDFPPEFYGFAVSKQQPELLNSINNTLKNLKESGQYQTL 238