Pairwise Alignments

Query, 256 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 223 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  122 bits (305), Expect = 8e-33
 Identities = 71/179 (39%), Positives = 108/179 (60%), Gaps = 15/179 (8%)

Query: 75  VYVSFFRGTPLFVQILLIHFAVMPVFIHPTSGLLIDGELARTLKQEHGALISGVVALTLN 134
           +Y+SFFRGTPL VQ+ L+++ +  VF      LL+  +          A  + V+ LTL+
Sbjct: 57  LYISFFRGTPLLVQLFLLYYGLPQVF-----PLLVGLD----------AFSAAVIGLTLH 101

Query: 135 SAAYISEVFRAGIQSISRGQFDAGRSLGFSPAQVMRYVVLPQAFRRMLPPLGNNAIALLK 194
            AAY++E  RA I  I R Q +A  S+G + +Q MR ++LPQA R  LP L N  I ++K
Sbjct: 102 FAAYMAESIRAAIIGIDRSQMEASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMIK 161

Query: 195 DTSLVSAIGLAELAYAARTVAGAYARYWEPYLAISVIYWVMTLVLTTLLRRLEIRLARS 253
            TSL   +G+AE+   A+  A +  R++E +LA+++IYWV+ LVLT L    E +L ++
Sbjct: 162 STSLAFTLGVAEIMAKAQMEASSSFRFFEAFLAVALIYWVVVLVLTRLQSWAEQKLNKA 220