Pairwise Alignments

Query, 296 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 285 a.a., RNA polymerase sigma factor SigJ from Sinorhizobium meliloti 1021

 Score =  196 bits (497), Expect = 7e-55
 Identities = 111/291 (38%), Positives = 171/291 (58%), Gaps = 18/291 (6%)

Query: 3   DATLTFNRHRPRLQGIAYRMLGSVAEAEEVVQDAWLRWHEAAKNTLDSAEAWLVTVVTRL 62
           DA  +F+  RP+L  +AYRMLGSVA+AE++VQ+A++RW  A +  +   EA+L   VTRL
Sbjct: 8   DAAASFDPLRPKLMRVAYRMLGSVADAEDMVQEAFIRWMGADRAEVREPEAFLRRTVTRL 67

Query: 63  SIDRLRAAKVQREHYIGAWMPEPTLTDASDSPATPEQLLERADNISVAFLAVLERLAPEA 122
            +D+L++A+ QRE Y+G W+P+P + +            E  +++++  +  LERL+P  
Sbjct: 68  CLDQLKSARRQRETYVGPWLPDPVVEE------------EEVEDVTLPLMLALERLSPLE 115

Query: 123 RAAFLLREVFDADYDEVARTLGKSEAACRQLVHRAKAQVQEGRPRFSVPRETHERLLRAF 182
           RAAFLL +VF   ++EVA T+ +  AACRQL  RA+  V+E RPRF V +E    L  AF
Sbjct: 116 RAAFLLHDVFGLGFEEVAATIQRDAAACRQLAARARTHVREARPRFHVEKERGLELAEAF 175

Query: 183 ADAAARGSLQGLKALMAEDAELIGDGGGKVQTFSKSLHGSQRVAQLY---FSLWRRMGPA 239
             A+  G +    A++A D  +  DGGGK       + G   V +++    +L+R  G  
Sbjct: 176 FKASRSGDMNAFGAMLAADVSIHADGGGKRSAAIMPIIGFDAVMKVHEKLAALFRANGSK 235

Query: 240 VRMEIVDINGEPGMLRF-LDGELESAQTFEIEDGRIVRIRAQRNPDKLARI 289
           + + +  +NG PG +    DGE+++    EIE G++  I   RNPDKL  +
Sbjct: 236 L-LRVGFVNGLPGFITMEADGEIQTT-ALEIEGGKVAAIYVVRNPDKLRHL 284