Pairwise Alignments

Query, 1665 a.a., Type IV fimbrial biogenesis protein PilY1 from Variovorax sp. SCN45

Subject, 1201 a.a., type IV pilin biogenesis protein, putative (RefSeq) from Shewanella amazonensis SB2B

 Score =  122 bits (306), Expect = 3e-31
 Identities = 128/517 (24%), Positives = 209/517 (40%), Gaps = 81/517 (15%)

Query: 1110 VDSKAEQRISFLRGEN-----DSFRVRKSLASGKSNILGDIVNSSPLRVKGALYRAGAAD 1164
            VDS+ +    ++ G+N     +     +  A  + +I+GD ++S PL +           
Sbjct: 654  VDSELKDTFDWIYGKNVDRDSEGALTSEDFAGVRGDIMGDPLHSQPLAIDYG-------- 705

Query: 1165 TLEGTGSNYAAFATGQAEKSEMIYVGANDGMFHAFRADTGD---ESFAFIPTAMRNNLNT 1221
               G GSN              I+VG N G  HAFR D+G    ES+AF+P  +  NL T
Sbjct: 706  ---GDGSNVR------------IFVGTNHGALHAFR-DSGSSVSESWAFMPFQLLPNLAT 749

Query: 1222 LTAPDYGKKDGTPHRYYVDGTPVA-----SDVYFGSAWHKVLIGSLGAGGRQVFALDVTN 1276
            +    Y         Y +DG+PVA     +      AW   L   L  GG+  +A+++T 
Sbjct: 750  IRRDSYLAGHSV---YGIDGSPVAHIERNASGLIMKAW---LFVGLRRGGQSYYAINITE 803

Query: 1277 PASPQLLWEFGADTVAGTNLNMGNSLPQPTIARLNDPAGGKGKWVALVPGGYQGGNNSSG 1336
            P SP+L+W     T   +N  MG +   P + ++     G  K V +  GGY  G +S  
Sbjct: 804  PDSPKLMWHISNSTSEFSN--MGQTWSTPVVTKIP----GSEKPVVIFGGGYNQGYDSGD 857

Query: 1337 GG---GASLFVLDISNGSVLRRLDLDGGMTAAELTASLPLGNGLSRVTAVDNTRDGKVDV 1393
            G    G  ++++D  +GS+L     +G      +  S+     +  +  +D+  DG  D 
Sbjct: 858  GSNSVGRMVYLVDAESGSLLYSFGANGNTVLTGIEDSI-----VGSIATLDSNSDGYTDR 912

Query: 1394 AYAGDLAGNMWRFDMSSGDISAWTVQKFF-TAKDADGKRQAITAAPYVTKHPTGKGDLVI 1452
             YA DL GN+WR D+ S D S W+  KF     +     +     P V +          
Sbjct: 913  LYAADLGGNVWRMDLPSADKSTWSGFKFAELGGNLPSTDRRFFYEPSVAQ--------TY 964

Query: 1453 FATGRLLTASDKSNLQRQTVYG--VWDRYSDSGATAPTPLP-TASKARSDLQSQSFAELE 1509
            F     +T +D+S       Y    +D  +        PL   A      LQ ++    +
Sbjct: 965  FTNTTEVTVTDESGTTTTVAYQNVPYDAVTLGSGNRADPLSLNAEDMFFVLQDRNVVSQQ 1024

Query: 1510 AGSGNFSLTN-------NTVTWYKANATGKRDSDVEKWGWVVDLPRNGEKVIY-DMTLYG 1561
             G G  ++ +         VT    +   +  +   K GW  +    GEK +   + + G
Sbjct: 1025 FGDGATAIPSPITFGNLYDVTSAAPSTEAENITFGTKLGWYYNFAVTGEKSLSPSVIIKG 1084

Query: 1562 RGLFLSSVRT----SEDPCAAGMGGTIYGIDPNGGGR 1594
            +  F S + T     ++ C+    G +Y +D + G R
Sbjct: 1085 KVYFTSFIPTQPAAGQNVCSVSSVGRLYTLDLHKGSR 1121