Pairwise Alignments

Query, 218 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 223 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  103 bits (256), Expect = 3e-27
 Identities = 63/203 (31%), Positives = 115/203 (56%), Gaps = 9/203 (4%)

Query: 19  TLQLSALAFIGGGLIGLAVALARVSPAKAVRMAAAGYIQVIQGTPLLVLMGVCFFG---- 74
           TL++++   +   ++ L +A  RV     +   +  YI   +GTPLLV + + ++G    
Sbjct: 22  TLEMASWGLVFALILALFLANIRVFKVPVLDPLSQLYISFFRGTPLLVQLFLLYYGLPQV 81

Query: 75  -PNIAGIGSVPALAAAALAITIYASAFLGEIWRGCIQAVPRSQWEAAECLALTRIERMRR 133
            P + G+    A +AA + +T++ +A++ E  R  I  + RSQ EA+  + +T  + MRR
Sbjct: 82  FPLLVGLD---AFSAAVIGLTLHFAAYMAESIRAAIIGIDRSQMEASLSVGMTTSQAMRR 138

Query: 134 VILPQALRIATPPTVGFLVQIIKNTSIASLVVGYAELSYNAKVLNNSTFQPFLYFGCAVV 193
           +ILPQA R+A P  + + + +IK+TS+A   +G AE+   A++  +S+F+ F  F    +
Sbjct: 139 IILPQATRVALPSLMNYFIDMIKSTSLA-FTLGVAEIMAKAQMEASSSFRFFEAFLAVAL 197

Query: 194 LYFILCYPLSRWSRALERKLNAA 216
           +Y+++   L+R     E+KLN A
Sbjct: 198 IYWVVVLVLTRLQSWAEQKLNKA 220