Pairwise Alignments

Query, 218 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 219 a.a., amino acid ABC transporter permease from Methanococcus maripaludis S2

 Score =  109 bits (272), Expect = 5e-29
 Identities = 67/211 (31%), Positives = 121/211 (57%), Gaps = 3/211 (1%)

Query: 7   EHFGFLLMGAWGTLQLSALAFIGGGLIGLAVALAR-VSPAKAVRMAAAGYIQVIQGTPLL 65
           ++  F++   + TL+++ ++F+   +I + V   R ++ +K + +    Y++V +GTPLL
Sbjct: 8   DNIPFIIDAVFVTLKITIMSFLLAVIIAVLVGSTRAMNFSKTLDLVLMAYVEVFRGTPLL 67

Query: 66  VLMGVCFFGPNIAGIGSVPALAAAALAITIYASAFLGEIWRGCIQAVPRSQWEAAECLAL 125
           + +   ++G    GI ++ +  AA L +++   A++ EI R  IQ+VP  Q+EAAE L +
Sbjct: 68  IQLFFIYYGLPSIGI-TMSSTFAAVLGLSLNGGAYISEIIRAAIQSVPVGQFEAAESLGM 126

Query: 126 TRIERMRRVILPQALRIATPPTVGFLVQIIKNTSIASLVVGYAELSYNAKVLNNSTFQPF 185
            +IE M  ++LPQA RI  PP V     I+K +S+ S V+   EL+   +++   T +PF
Sbjct: 127 GKIESMVYIVLPQAFRITIPPLVNSFSSILKESSLIS-VLAITELTRIGQLIYTRTSRPF 185

Query: 186 LYFGCAVVLYFILCYPLSRWSRALERKLNAA 216
             +    ++Y IL   +S  S  +E+KLN A
Sbjct: 186 EIYLTIGLIYLILVSIISIGSWKIEKKLNGA 216