Pairwise Alignments

Query, 429 a.a., Diaminopimelate decarboxylase (EC 4.1.1.20) from Variovorax sp. SCN45

Subject, 414 a.a., diaminopimelate decarboxylase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  439 bits (1128), Expect = e-127
 Identities = 221/411 (53%), Positives = 281/411 (68%), Gaps = 3/411 (0%)

Query: 16  HVAQRDGALHVEGVALDALAREHGTPLFVYSKQWMLDALAAYQRGFEGRDALICYAMKAN 75
           H   +D  L+ EG  ++ LA+ +GTPL++YS+  +     A+     G   L+CYA+KAN
Sbjct: 3   HFLYQDNTLYAEGCRVNDLAQTYGTPLYIYSRATLERHWHAFNNAVAGHPHLVCYAVKAN 62

Query: 76  SSLGVLRVFAEAGCGFDIVSGGELSRVLAVGADPKKIIFSGVGKTRAEMRQALAAGIACF 135
           S+L VL V A  G GFDIVSGGEL+RV+  G DP K++FSGVGKT AEM QAL  GI CF
Sbjct: 63  SNLAVLNVLARLGSGFDIVSGGELARVIEAGGDPAKVVFSGVGKTVAEMEQALNLGIYCF 122

Query: 136 NVESEAELDVLSEVAAAEGKRAPISIRINPNVDPKTHPYISTGLKGNKFGIAHDRAVEAY 195
           NVES AEL+ L+ VA   GK AP+S+R+NP+VD  THPYISTGLK NKFGIA D A   +
Sbjct: 123 NVESSAELEQLNLVAGRLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDEAEAVF 182

Query: 196 RHAARLPGLEVVGIDCHIGSQITEASPYLDACDRVLDLVEAIEAAGVPIHHLDFGGGLGI 255
             A  LP L+V G+DCHIGSQ+TE  P+LDA DR+L L++ +   G+ I H D GGGLG+
Sbjct: 183 ARAHALPHLQVKGVDCHIGSQLTEIQPFLDAMDRMLSLIDRLAEQGIVIEHFDVGGGLGV 242

Query: 256 DYNGEVPPKADALWQQLLAKLDARGFGQRKLVIEPGRSLVGNAGVCVTEVLYTKPGEDKN 315
            Y+ E PP  D     LL +L   G  + KL+ EPGR++  NAG+ VTEVLY K   DK 
Sbjct: 243 TYDDETPPHPDVYAAALLKRL---GHRKLKLIFEPGRAIAANAGIFVTEVLYLKENSDKR 299

Query: 316 FCIIDAAMNDLPRPAMYQAFQRIVPVRTRAGDAPVYDVVGPVCESGDWIGRDRTLNVVAG 375
           F I+D AMNDL RPA+Y A+Q+I+PV  R   A V+D+VGPVCE+GD++G+DR   +  G
Sbjct: 300 FAIVDGAMNDLIRPALYSAWQKIIPVTPRDDQAHVFDIVGPVCETGDFLGKDREFAIAPG 359

Query: 376 DLLAVLSAGAYCMSMASNYNTRGRAAEVLVSGAAAKLIRRRETMEDQLRAE 426
           DLL V S+GAY  +MASNYNTR RAAEV+V G  A L+R RE +    + E
Sbjct: 360 DLLVVRSSGAYGFAMASNYNTRPRAAEVMVDGDKAYLVREREKLPQLWQGE 410