Pairwise Alignments

Query, 527 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  288 bits (737), Expect = 3e-82
 Identities = 184/533 (34%), Positives = 274/533 (51%), Gaps = 23/533 (4%)

Query: 1   MSFKKNVAAAAVLCALGAVSMVASAQTIRIANQGDALSLDPHSLNESLQLSVTANVYETL 60
           M   KN  A A++ A   +S  A A  I +A   D +S+DPH       L ++  V++ L
Sbjct: 1   MKTMKNKLALALIAA--GLSFGAMAADITVAYDADPVSMDPHEQLSGGTLQLSHMVFDPL 58

Query: 61  VGRNKDLSLAPLLATSWKQTSPNVWRFELRKGVVFHDGTPFTADDVVFSFARAQGDGSDM 120
           +   + +   P LA SW++      RF LRKGV FH G  FTADDVV++F R + + +D 
Sbjct: 59  IRFTQKMEFEPRLAESWQRVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNRLK-ESADF 117

Query: 121 RATLSDIKAVRKVGDLAVEIETNGPFPILPDVISLTMIMSKKWCEENQAT--KPVDRRKG 178
           +     + ++ KV D  +EI+T G +P++ +V +    M  K+     A      +  K 
Sbjct: 118 KGIFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIFPMDSKFYTGTTADGKNKAEIVKH 177

Query: 179 IENTASFKANGTGPFRVRERQPNVRTVFTRNGTYWGKID-GNAQEVIFTPIANPATRVAA 237
             + AS   +GTGPF V  R+  V+  F RN  YW K   GN  ++    I   ATRVAA
Sbjct: 178 GNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKEDATRVAA 237

Query: 238 LVSGEVDVMEPVPVQDIARINAAPNARVITGPEMRTIFLGMDQKRDELQYSNVKGKNP-F 296
           L+SG VD++ PV   D  RI  A    + T P  R I   M+Q             NP  
Sbjct: 238 LLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQN-----------SNPAL 286

Query: 297 KDKRVRQAFYQAIDIAGIQRTVMRGASRPTALLVGPGINGWTAEQDKRLPYDVEAAKKLL 356
           KD RVRQA   AI+  GI   VM+GA+   A     G  G+      R  +D+  AK+L+
Sbjct: 287 KDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPR--FDLNKAKELM 344

Query: 357 TEAGYPNGFEVSLNCPNDRYVNDGQICQSVASNLAKIGVKINLVAETKGTYFPKVLRRDT 416
            EAGY  GF +++  PN+RYVND +I Q+ ++ L+KIG+K++L    K  Y+P+  +   
Sbjct: 345 KEAGYEKGFNLTMIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAA 404

Query: 417 SFYMLGWTPTTYDSHNALSSLTSCPD-DKGTGQFNLGAYCNPKLDELTKKIQSEGDKDKR 475
              M+GW P T DS N    LT   D + G GQ+N G Y N ++D+L      E D +KR
Sbjct: 405 DMLMIGWHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSNAEVDKLVNAANEETDLEKR 464

Query: 476 NEMIKEAFKIHADDVGHLPLHQQSLAWGVSKKVELVQLAD--NFMYFKWMSIK 526
           + M+K+  +I  ++   +PLH Q  +W     +++  + +  +F YF  + +K
Sbjct: 465 STMLKKVEEILYNEAAFVPLHFQDPSWAAKNTLDIAPIINGMDFPYFGDLVVK 517