Pairwise Alignments

Query, 527 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 520 a.a., peptide-binding periplasmic ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  336 bits (861), Expect = 1e-96
 Identities = 196/516 (37%), Positives = 289/516 (56%), Gaps = 12/516 (2%)

Query: 4   KKNVAAAAVLCALGAVSMVASAQTIRIANQGDALSLDPHSLNESLQLSVTANVYETLVGR 63
           KK   AA +L  L   ++   A+T++     D  SLDP+S  +S  LS   +VYE LV  
Sbjct: 3   KKLGLAATMLMGL---TLSGHAETLKWGAARDIYSLDPYSYGDSYTLSFLNHVYEGLVRY 59

Query: 64  NKDLSLAPLLATSWKQTSPNVWRFELRKGVVFHDGTPFTADDVVFSFARAQGDGSDMRAT 123
           + +L + P LA SW+  S  VWRF LRKGV FHDG  FTADDV+ S  R     S +R  
Sbjct: 60  DANLKIEPALAESWETVSDTVWRFHLRKGVKFHDGAEFTADDVLASLKRVSDPVSPLRGN 119

Query: 124 LSDIKAVRKVGDLAVEIETNGPFPILPDVISLTMIMSKKWCEENQATKPVDRRKGIENTA 183
           L   K+ +KV D  ++IE +GP+P+L + ++   +    W + N + KP D    IE  A
Sbjct: 120 LPAYKSSKKVDDHTIDIELSGPYPLLLNDLTNIHVFDAGWLKTNNSEKPTDVGAKIEGYA 179

Query: 184 SFKANGTGPFRVRERQPNVRTVFTRNGTYWGKID-GNAQEVIFTPIANPATRVAALVSGE 242
           ++  NGTGPF++  R P+ +TV  +N  +W K    N   + FTPI + ATRVAAL+SGE
Sbjct: 180 TYHTNGTGPFKLESRVPDSKTVLVKNPDWWDKTSKSNVDRIEFTPITSAATRVAALLSGE 239

Query: 243 VDVMEPVPVQDIARINAAPNARVITGPEMRTIFLGMDQKRDELQYSNVKGKNPFKDKRVR 302
           V+  E  P QD+ R+ A P+ +V+   ++RT+ +G ++K +    S    +N F D RVR
Sbjct: 240 VNFTENAPSQDLPRLQAQPDLKVMERTDLRTVMVGFNRKPELANGS----ENKFNDLRVR 295

Query: 303 QAFYQAIDIAGIQRTVMRGASRPTALLVGPGINGWTAEQDKRLPYDVEAAKKLLTEAGYP 362
           QAF  A+D   IQ+ VMRG SR    +V P I G+  E D  L +D   +KKLL EAG  
Sbjct: 296 QAFAHALDRDLIQQRVMRGKSRTAGAVVAPEIPGYAPELDTTLAFDPALSKKLLAEAG-A 354

Query: 363 NGFEVSLNCPNDRYVNDGQICQSVASNLAKIGVKINLVAETKGTYFPKVLRRDTSFYMLG 422
           + +  +L C  D YVN+ ++CQ + + L++ G K  L         PK     +  Y++G
Sbjct: 355 SDYPFTLVCTTDAYVNEEELCQGLVNLLSRAGFKPQLDIAPTAAQAPKRTSGKSDVYLIG 414

Query: 423 W-TPTTYDSHNALSSLTSCPDDKGTGQFNLGAYCNPKLDELTKKIQSEGDKDKRNEMIKE 481
           W T    DS++ L  +         G FN G +  P++D+L  +  +E D+ KR  +  +
Sbjct: 415 WATEPMLDSYSILLQMIQ-TKTANAGVFNWGGWSYPEIDKLIVQASTEMDRTKRLALQSK 473

Query: 482 AFKIHADDVGHLPLHQQSLAWGVSKKVE-LVQLADN 516
           A ++  D++  LPLHQQ +AW +S K++ +VQL DN
Sbjct: 474 ALQMVKDEIVMLPLHQQPMAWVMSNKIDKIVQLPDN 509