Pairwise Alignments

Query, 326 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 311 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  216 bits (550), Expect = 6e-61
 Identities = 116/323 (35%), Positives = 184/323 (56%), Gaps = 18/323 (5%)

Query: 1   MIAFVLRRLIQAVIVMIAVAFIAFLLFQYVGDPVVFLLGQD----AKPDQIRELRAALGL 56
           M+ F LRR++Q +  ++ VA + F++F  V       L  D    A P  I  L    GL
Sbjct: 1   MLRFTLRRVLQIIPTVVVVALLIFVIFSVVPGTFAASLFADGRRAADPQMIARLNEEFGL 60

Query: 57  DQPFFVQFWHFLVNAAQGEFGLSLRQGAKVSRLIGERFPATLELALVAAVLALFIGIPMG 116
           ++P   +F  ++ + AQ + G S R    V  LI +R  A+L+LA+ A + AL I +P+G
Sbjct: 61  NKPLMERFVTYVTDLAQFDLGTSFRTRQPVIDLINDRMWASLQLAIAAMIFALVISVPLG 120

Query: 117 VYTALRRGTFMSQFFMTVSLLGVSLPTFLIGILLILVFAVTLGWFPSFGRGETVKFGWWT 176
              ALR G+ +    M  ++ G+S+P F +G+L++ +FA+ L W PSFG G+        
Sbjct: 121 FVAALRPGSVLDTVTMIGAVSGLSMPQFWLGLLMMYLFALQLNWLPSFGYGD-------- 172

Query: 177 SGLFSVDGWQHIVLPAVTLAIFQLTLIMRLVRAEMLEVLRTDYIKFARARGLSNRAIHFG 236
                   +++++LPAVTL +  L L+ R  RA +L+VL  D+I+ A ++G+S   +   
Sbjct: 173 ------GSFRNLILPAVTLGVTPLALLARTTRAGVLDVLNADFIRTAHSKGMSEAKVVRW 226

Query: 237 HALKNTLVPVMTITGLQLGGLIAFAIITESVFQWPGMGLLFIQAVTFADIPVMAAYLCLI 296
           H  +N LV ++T  GLQ G LI  A++ E +F WPG+G L + +V   DIPV+   + +I
Sbjct: 227 HVARNALVLIVTTVGLQFGSLIGQAVVIEKLFAWPGIGSLLVDSVASRDIPVVQGTILVI 286

Query: 297 ALIFVVINLVVDLLYFVVDPRLR 319
            L F+VIN  VDL+Y  +DPR++
Sbjct: 287 VLWFLVINTAVDLIYAAIDPRIK 309