Pairwise Alignments

Query, 232 a.a., General secretion pathway protein J from Variovorax sp. SCN45

Subject, 221 a.a., type II secretion system protein GspJ from Vibrio cholerae E7946 ATCC 55056

 Score = 47.8 bits (112), Expect = 2e-10
 Identities = 57/203 (28%), Positives = 83/203 (40%), Gaps = 40/203 (19%)

Query: 1   MHDARQARSGTSARGFTLIELLVAIAVMALLSLVSWRGLDSMSRATTQNQQRADAVLTLQ 60
           M    Q  S  +  GFTLIE+LVAIA+ A LS+ +++ L+ + R+   + +R   +  LQ
Sbjct: 1   MWRTNQVSSRQNMAGFTLIEVLVAIAIFASLSVGAYQVLNQVQRSNEISAERTARLAELQ 60

Query: 61  ATLAQWGSDLDAVATLAQTRPIDWDGRVLRLTRRGSDTTAPSMLVVAW---TLRPGPDGL 117
             +                  +D D R + L +  +D  APS  ++ W    L     GL
Sbjct: 61  RAMV----------------IMDADFRQMALRQFRTDGEAPSEQILQWKESLLDSDQHGL 104

Query: 118 RWRR--W----QSLPFTTRGEWQQAW------NLAAAWSQDGGTQTG--GASDTALMPVE 163
            + R  W    Q  P   RGE  +         L   W +   T  G  G     L  VE
Sbjct: 105 LFVRLGWHNPQQQFP---RGEVAKVGYRLFENRLERVWWRYPDTPAGQQGLISPLLTGVE 161

Query: 164 SWQL-FYFR---DNSWVPASQLP 182
            W + FY +      WVP + LP
Sbjct: 162 DWAVQFYLQGEWSKEWVPTNALP 184