Pairwise Alignments

Query, 355 a.a., General secretion pathway protein L from Variovorax sp. SCN45

Subject, 407 a.a., type II secretion system protein GspL from Vibrio cholerae E7946 ATCC 55056

 Score = 45.1 bits (105), Expect = 3e-09
 Identities = 71/274 (25%), Positives = 110/274 (40%), Gaps = 29/274 (10%)

Query: 22  GSASKLRAVLDGLLEEHLLDEPEALHFALEPDAKAGAPVWVAACNRIWLRSIVQGLEAAG 81
           G++ +L  +L  LLE+ +  + E +HF +    +  A V     +R+WLR+ +  L+A G
Sbjct: 76  GASRQLENMLPYLLEDEIAQDVEDVHFCVLSKGRETADV--VGVDRLWLRACLDHLKACG 133

Query: 82  RRVVRIVPEF--APQPADGPPLLQVTGE----PEAPQLTVCDADGVVSLPLAGAGLALSG 135
             V R++P+    P+P  G   LQ+  E        Q    DA   +SL  A   +   G
Sbjct: 134 FDVKRVLPDVLAIPRPEHGLAALQLGDEWLVRKSTTQGMAVDAQW-LSLLAASDWVQNEG 192

Query: 136 G-LPLDTAVITTEPAVAEAAEHLLERRVPIVQTPQRWLQAARTPWELAQFDLAVTGRARA 194
             LPL       E ++AE  E   E   P     Q   Q A T    ++F+L +TG    
Sbjct: 193 EYLPLQALTPLPELSLAETQEWRYE---PSGLVMQLLTQEALT----SKFNL-LTG---- 240

Query: 195 GKKFASVLQTLRYAPEWRAARWGVAVLLLTQLIGLNAWAWKERNALDSKRQAARAMLTQT 254
              F      LRY   WR       + +   +      A +     D+ R  +  +    
Sbjct: 241 --SFKLKSSWLRYWQIWRKVAIAAGLFVAVSISYSLFQAHQYEAQADAYRAESERIFRSI 298

Query: 255 FP---SVKIVVDAPLQMQREVAALQ--QAVGDVV 283
           FP    +  V     QM  E+A L    +VG V+
Sbjct: 299 FPDKQKIPTVTYLKRQMSDEMARLSGGASVGSVL 332