Pairwise Alignments

Query, 763 a.a., General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) from Variovorax sp. SCN45

Subject, 787 a.a., General secretion pathway protein D from Pseudomonas fluorescens FW300-N2E2

 Score =  491 bits (1264), Expect = e-143
 Identities = 297/724 (41%), Positives = 418/724 (57%), Gaps = 77/724 (10%)

Query: 35  SDAPRR----GEPITLNFANADIEAVARTMAVVTGRDVVVDPRVKGTMNLVTDRAIQPAA 90
           S+AP R     +P+TLNF  ADI+AV R ++  TG+  +VDPRVKG + LV++  +    
Sbjct: 86  SNAPARTPLGDQPVTLNFVEADIQAVVRALSRSTGQQFLVDPRVKGNLTLVSEGQVPAHQ 145

Query: 91  AFNQFASALRLQGFAVVEADGLYKVVPEADAKLQSSAVNTSIGAVSSSGSNQIVTQIFRL 150
           A++   +ALR+QGF+VV+  G+ +VVPEADAKL    + ++         N ++T+ FRL
Sbjct: 146 AYDMLLAALRMQGFSVVDVGGVAQVVPEADAKLLGGPIYSA----DKPAGNGMLTRTFRL 201

Query: 151 NYESPNSLLPVLRPLIPPNNTINVNPGNNSLVITDYADNMRRLARIIASLDVPNASDVEV 210
            YE+  +L+PVLRP++ PNN IN  PGNN++V+TDYA+N+ R+A++I  +D P+A D +V
Sbjct: 202 QYENAVNLIPVLRPIVSPNNPINAYPGNNTIVVTDYAENLSRVAQLIEGIDTPSAIDTDV 261

Query: 211 IQLKHSIASDMVPLISRLIEGSGSGAPGTAAAPGATDASFRTTLLADPRSNSLILRAANP 270
           + + + IA D+  ++S L+E  G             D + +  ++ DPRSNS+I+RA +P
Sbjct: 262 VPIHNGIAVDIAQMVSDLLETQGG------------DQTQKINVIGDPRSNSIIIRAGSP 309

Query: 271 ARVQLVRTLVEKLDRQPAEGSNGAAGNIYVVYLKNADAVRLAATLRAAMAANQQ------ 324
            R +L R L+ KLD      SN     ++VVYL+NA A +LA  LR  +    +      
Sbjct: 310 ERTELARNLIYKLDNAQNNPSN-----LHVVYLRNAQAGKLAQALRGLLTGESEGESSDN 364

Query: 325 ---------TSASGQPGAAGSSPVPQQSAPQAMQVNLSGGQNGGSAAASAPLNNANQPST 375
                     S +GQ G   S      S   +   + SG   G  +  + P +  N+ +T
Sbjct: 365 SRSVLSGMGASTNGQSGQGSSGD--GTSGTTSGNASTSGNGYGQGSNGTTPASTKNEQNT 422

Query: 376 -----GGQIQADPTTNSLIITAPEPQYRQMRAVIDKLDGRRAQVMIEALIVEVSAKKAAN 430
                G  IQAD TTN+L+I+AP+P YR +R VID LD RRAQV+IE+LIVEV    A+ 
Sbjct: 423 AFSAGGVTIQADATTNTLLISAPDPLYRNLREVIDLLDQRRAQVVIESLIVEVGEDDASE 482

Query: 431 FGVQWQSA-LGNNAVIGTNSSLASANILALTQALATKNVAGITPSPGLNLGIAGK----- 484
           FGVQWQ+  LG + VIG        N+      L  K    + P  GLNLG+        
Sbjct: 483 FGVQWQTGNLGGSGVIG------GVNLGGTALNLNGKTSIDVLPQ-GLNLGVVNGTVDIP 535

Query: 485 -IGGQYILGAIANFFNSDGDANVLSTPNLLTLDNEEAKIVIGQNVPFVTGQYASTSGSVG 543
            IG    L  +A    S G  NVLSTPNLLTLDNE A I +GQ +PFV+G Y +  G   
Sbjct: 536 GIGKILDLKVLARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVSGSYVTGGGGTS 595

Query: 544 INPFTTVERKDVGLTLRVRPTINENGTVKMTIFQETSTVDQNTAKDPNGPTTNKRSIESS 603
            NPF TV R++VGL L VRP I+E GTVK+ I+QE S+VD N A    G  TNKR+I++S
Sbjct: 596 NNPFQTVTREEVGLKLNVRPQISEGGTVKLDIYQEVSSVD-NRASSTTGIVTNKRAIDTS 654

Query: 604 VLVEDGGLVMLGGLLSDDYGNTVEKVPVAGDIPVLGNLFKNEVRTRNKSNLMMFLRPAVM 663
           +L++DG +++LGGLL D Y  + + VP    IP +G LF+NE R   K+NLM+FLRP ++
Sbjct: 655 ILLDDGQIMVLGGLLQDGYSQSNDAVPWLSTIPGIGALFRNERRQITKTNLMVFLRPYII 714

Query: 664 RDGASTQAFAYDRYDEIRGMQQRTQPSTDNIMLRGVDSAPVLPEVPLVRAAPNAPGSER- 722
           RD A+ +    +RYD +R  Q   QP          D +  +P++     AP  P S R 
Sbjct: 715 RDTAAGRGITLNRYDFMRRAQGLLQP----------DRSWAMPDM----QAPQLPASARA 760

Query: 723 IGGT 726
           I GT
Sbjct: 761 IPGT 764