Pairwise Alignments

Query, 763 a.a., General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) from Variovorax sp. SCN45

Subject, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

 Score =  115 bits (287), Expect = 8e-30
 Identities = 91/304 (29%), Positives = 145/304 (47%), Gaps = 19/304 (6%)

Query: 369 NANQPSTGGQIQADPTTNSLIITAPEPQYRQMRAVIDKLDGRRAQVMIEALIVEVSAKKA 428
           N N  S  G I  D  TNSL+I         +R +I+ LD    QV IEA IV V     
Sbjct: 283 NVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGNL 342

Query: 429 ANFGVQW--QSALGNNAVIGT-NSSLASANILALTQ----ALATKNVAGITPSPGLNLGI 481
              GV+W   S  G+++V G+  S+L    +LA  +         N+A  + +       
Sbjct: 343 EELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASSIAFQ 402

Query: 482 AGKIGGQYILGAIANFFNSDGDANVLSTPNLLTLDNEEAKIVIGQNVPFVTGQYASTSGS 541
             K+G   +L    +   ++  A ++S+P L+T + + A I  G  +P++    +S+SG+
Sbjct: 403 VAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLE---SSSSGA 459

Query: 542 VGINPFTTVERKDVGLTLRVRPTINENGTVKMTIFQETSTVDQNTAKDPNGPTTN--KRS 599
                 +TV  K   L+L+V P I  +  + + +   T      T K   G   +   + 
Sbjct: 460 ------STVAFKKAVLSLKVTPQITPDNRLVLDL-SVTQDRRGETVKTGTGEAVSIDTQR 512

Query: 600 IESSVLVEDGGLVMLGGLLSDDYGNTVEKVPVAGDIPVLGNLFKNEVRTRNKSNLMMFLR 659
           I + VLV +G  V+LGG+      N+V+KVP+ GD+PVLG LF+       KS L++F+ 
Sbjct: 513 IGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVT 572

Query: 660 PAVM 663
           P V+
Sbjct: 573 PKVV 576



 Score = 41.6 bits (96), Expect = 1e-07
 Identities = 37/187 (19%), Positives = 83/187 (44%), Gaps = 17/187 (9%)

Query: 39  RRGEPITLNFANADIEAVARTMAVVTGRDVVVDPRVKGTMNLVTDRAIQPAAAFNQFASA 98
           + G+ I++NF +  +  V + +A   G ++VV   V G + L  D        + Q    
Sbjct: 161 KEGKLISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLD-----GVPWQQVLDI 215

Query: 99  -LRLQGFAVVEADGLYKVVPEADAKLQSSAVNTSIGAVSSSGSNQIVTQIFRLNYESPNS 157
            L+++G        +  + P+ +  L+              G   + ++I ++N+   + 
Sbjct: 216 ILQVKGLDKRVDGNVILIAPKEELDLREKQALEKARLAEELGD--LKSEIIKINFAKASD 273

Query: 158 LLPVLRP-----LIPPNNTINVNPGNNSLVITDYADNMRRLARIIASLDVPNASDVEVIQ 212
           +  ++       ++    +I+++   NSL+I +  DN+  +  II SLD+P    V+ +Q
Sbjct: 274 IAAMIGGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIP----VKQVQ 329

Query: 213 LKHSIAS 219
           ++  I +
Sbjct: 330 IEARIVT 336