Pairwise Alignments

Query, 763 a.a., General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) from Variovorax sp. SCN45

Subject, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

 Score =  115 bits (288), Expect = 6e-30
 Identities = 102/407 (25%), Positives = 175/407 (42%), Gaps = 60/407 (14%)

Query: 298 IYVVYLKNADAVRLAATLRAAMAANQQTSASGQPGAAGSSPVPQQSAPQAMQVNLSGGQN 357
           I V YL+     R   ++      N  T+ S    ++ SS +   S+      N +  ++
Sbjct: 148 IPVDYLQFKRTGRSLTSITTGTITNTDTNNSNSSSSSSSS-ISSNSSSDGSSSNSNSNRS 206

Query: 358 GGSAAASAPLNNANQ-------------PSTGGQ-IQADPTTNSLIITAPEPQYRQMRAV 403
                      N +                +GGQ +  +P    L + A   + RQ+   
Sbjct: 207 DARGGTEIETTNESDFWPLLEKAVAQLLGGSGGQTVIVNPQAGVLTLRAYPDEIRQVNEF 266

Query: 404 IDKLDGR-RAQVMIEALIVEVSAKKAANFGVQWQSALGNNAV---IGTNSSLASANILAL 459
           +     R   QV++EA I+EV+       G+ W  A  +N     IG+ S    +N   +
Sbjct: 267 LGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPI 326

Query: 460 TQALATKNVAGITPSPGLNLGIAGKIGGQYIL-------GAIANFFNSDGDANVLSTPNL 512
           T  L           PGL+  I   +GGQ  +        A+ +F  + GD NVLS+P +
Sbjct: 327 TSVL-----------PGLD-AIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRV 374

Query: 513 LTLDNEEAKIVIGQNVPFVT--------GQYASTSGSVGINPFTTVERKDVGLTLRVRPT 564
              +N++A I +G +  +VT        G  A  S  + + PF +      G++L V P 
Sbjct: 375 TASNNQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFS------GISLDVTPQ 428

Query: 565 INENGTVKMTIFQETSTVDQNTAK--------DPNGPTTNKRSIESSVLVEDGGLVMLGG 616
           I++ G V + +      V+Q T K        +     ++ R  +S +  +DG +V++GG
Sbjct: 429 IDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGG 488

Query: 617 LLSDDYGNTVEKVPVAGDIPVLGNLFKNEVRTRNKSNLMMFLRPAVM 663
           L+  +  + V KVP  GD+P LG+LF+N  +   K+ L++ L+P V+
Sbjct: 489 LMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535