Pairwise Alignments

Query, 763 a.a., General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) from Variovorax sp. SCN45

Subject, 484 a.a., type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 92.8 bits (229), Expect = 4e-23
 Identities = 66/251 (26%), Positives = 109/251 (43%), Gaps = 16/251 (6%)

Query: 413 QVMIEALIVEVSAKKAANFGVQWQSALGNNAVIGTNSSLASANILALTQALATKNVAGIT 472
           QVM+E  + E+        G+    A   + + G  + L +   L   + +     +G  
Sbjct: 177 QVMLEVKVAEMRRNVMERLGIDLTYAWRGDFIFGMLNQLFT---LDSQKGVVDAGPSGAV 233

Query: 473 PSPGLNLGIAGKIGGQYILGAIANFFNSDGDANVLSTPNLLTLDNEEAKIVIGQNVPFVT 532
            SP +N G      GQ  +    +    +G   VL+ P L+    E+A+ + G  +P   
Sbjct: 234 LSPNVN-GAFRITSGQVSIMGFLDVLKQNGLVKVLAEPTLVCRSGEKAEFLAGGEIPIPV 292

Query: 533 GQYASTSGSVGINPFTTVERKDVGLTLRVRPTINENGTVKMTIFQETSTVDQNTAKDPNG 592
            Q   T           +E K+ G+TL+  PT+  +G + M +  E S +D        G
Sbjct: 293 PQGLGT---------VAIEYKEFGVTLQFLPTVVGDGRISMKVAPEVSELDYTNVVQIQG 343

Query: 593 ---PTTNKRSIESSVLVEDGGLVMLGGLLSDDYGNTVEKVPVAGDIPVLGNLFKNEVRTR 649
              P    R   ++V + DG    + GLL DD    V K PV GD+PVLG LF++    +
Sbjct: 344 FTIPAITSRRASTTVELADGQSFAIAGLLRDDVRQAVNKYPVLGDMPVLGTLFRSSNWQK 403

Query: 650 NKSNLMMFLRP 660
           N++ L++ + P
Sbjct: 404 NETELVIIVTP 414